Back to Workflows build report for BioC 3.7

BUILD WEB VIG report for proteomics on malbec2

This page was generated on 2018-05-18 12:48:06 -0400 (Fri, 18 May 2018).

Package 13/21HostnameOS / ArchINSTALLBUILDBUILD WEB VIG
proteomics 1.2.0
Bioconductor Package Maintainer
Snapshot Date: 2018-05-18 07:35:08 -0400 (Fri, 18 May 2018)
URL: https://git.bioconductor.org/packages/proteomics
Branch: RELEASE_3_7
Last Commit: 7254af0
Last Changed Date: 2018-04-30 10:07:09 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: proteomics
Version: 1.2.0
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/proteomics/proteomics.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/proteomics/proteomics.Rmd", ".buildwebvig/proteomics/proteomics.R")'
StartedAt: 2018-05-18 08:43:50 -0400 (Fri, 18 May 2018)
EndedAt: 2018-05-18 08:49:55 -0400 (Fri, 18 May 2018)
EllapsedTime: 365.2 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/proteomics/proteomics.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/proteomics/proteomics.Rmd", ".buildwebvig/proteomics/proteomics.R")'
###
##############################################################################
##############################################################################


> rmarkdown::render(".buildwebvig/proteomics/proteomics.Rmd", output_format="BiocStyle:::html_fragment")


processing file: proteomics.Rmd

  |                                                                            
  |                                                                      |   0%
  |                                                                            
  |.                                                                     |   1%
  ordinary text without R code


  |                                                                            
  |.                                                                     |   2%
label: unnamed-chunk-1 (with options) 
List of 3
 $ echo   : logi FALSE
 $ results: chr "hide"
 $ warning: logi FALSE


  |                                                                            
  |..                                                                    |   2%
   inline R code fragments


  |                                                                            
  |..                                                                    |   3%
label: env0 (with options) 
List of 3
 $ message: logi FALSE
 $ echo   : logi FALSE
 $ warning: logi FALSE

Bioconductor version 3.7 (BiocInstaller 1.30.0), ?biocLite for help

This is the 'RforProteomics' version 1.18.0.

  To get started, visit
    http://lgatto.github.com/RforProteomics/

  or, in R, open package vignettes by typing
    RforProteomics() # R/Bioc for proteomics overview
    RProtVis()       # R/Bioc for proteomics visualisation

  For a full list of available documents:
    vignette(package='RforProteomics')



Attaching package: 'RforProteomics'

The following object is masked from 'package:stats':

    spectrum


  |                                                                            
  |...                                                                   |   4%
  ordinary text without R code


  |                                                                            
  |...                                                                   |   5%
label: env (with options) 
List of 3
 $ message: logi FALSE
 $ echo   : logi TRUE
 $ warning: logi FALSE


  |                                                                            
  |....                                                                  |   6%
   inline R code fragments


  |                                                                            
  |.....                                                                 |   6%
label: r4pinstall (with options) 
List of 1
 $ eval: logi FALSE


  |                                                                            
  |.....                                                                 |   7%
   inline R code fragments


  |                                                                            
  |......                                                                |   8%
label: pk (with options) 
List of 3
 $ echo   : logi FALSE
 $ warning: logi FALSE
 $ cache  : logi TRUE


  |                                                                            
  |......                                                                |   9%
   inline R code fragments


  |                                                                            
  |.......                                                               |  10%
label: pp (with options) 
List of 1
 $ eval: logi FALSE


  ordinary text without R code


  |                                                                            
  |........                                                              |  11%
label: datatab (with options) 
List of 2
 $ results: chr "asis"
 $ echo   : logi FALSE


  |                                                                            
  |........                                                              |  12%
   inline R code fragments


  |                                                                            
  |.........                                                             |  13%
label: rpx

  |                                                                            
  |..........                                                            |  14%
  ordinary text without R code


  |                                                                            
  |..........                                                            |  15%
label: pxd (with options) 
List of 1
 $ cache: logi TRUE


  |                                                                            
  |...........                                                           |  15%
  ordinary text without R code


  |                                                                            
  |...........                                                           |  16%
label: pxvar

  |                                                                            
  |............                                                          |  17%
  ordinary text without R code


  |                                                                            
  |............                                                          |  18%
label: pxget (with options) 
List of 1
 $ cache: logi TRUE

trying URL 'ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2012/03/PXD000001/TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01-20141210.mzML'
Content type 'unknown' length 450032788 bytes (429.2 MB)
==================================================

  |                                                                            
  |.............                                                         |  19%
  ordinary text without R code


  |                                                                            
  |..............                                                        |  19%
label: rawms

  |                                                                            
  |..............                                                        |  20%
  ordinary text without R code


  |                                                                            
  |...............                                                       |  21%
label: hd

  |                                                                            
  |...............                                                       |  22%
  ordinary text without R code


  |                                                                            
  |................                                                      |  23%
label: hdpeaks

  ordinary text without R code


  |                                                                            
  |.................                                                     |  24%
label: msmap

  |                                                                            
  |..................                                                    |  25%
   inline R code fragments


  |                                                                            
  |..................                                                    |  26%
label: id (with options) 
List of 1
 $ cache: logi TRUE


  |                                                                            
  |...................                                                   |  27%
  ordinary text without R code


label: mzrvsid (with options) 
List of 1
 $ eval: logi TRUE


  |                                                                            
  |....................                                                  |  28%
   inline R code fragments


  |                                                                            
  |....................                                                  |  29%
label: rtandem (with options) 
List of 1
 $ eval: logi FALSE


  |                                                                            
  |.....................                                                 |  30%
   inline R code fragments


  |                                                                            
  |.....................                                                 |  31%
label: ex_getfas (with options) 
List of 1
 $ cache: logi TRUE

trying URL 'ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2012/03/PXD000001/erwinia_carotovora.fasta'
Content type 'unknown' length 1657668 bytes (1.6 MB)
==================================================

  |                                                                            
  |......................                                                |  31%
  ordinary text without R code


  |                                                                            
  |.......................                                               |  32%
label: ex_msgfplus (with options) 
List of 2
 $ message: logi FALSE
 $ cache  : logi TRUE

MS-GF+ Beta (v10072) (6/30/2014)
Loading database files...
Creating /home/biocbuild/bbs-3.7-workflows/meat/.buildwebvig/proteomics/erwinia_carotovora.revCat.fasta.
Creating the suffix array indexed file... Size: 2920847
AlphabetSize: 28
Suffix creation: 0.00% complete.
Sorting 0.00% complete.
Sorting 5.81% complete.
Sorting 11.62% complete.
Sorting 17.43% complete.
Sorting 23.24% complete.
Sorting 29.05% complete.
Sorting 34.86% complete.
Sorting 40.67% complete.
Sorting 46.48% complete.
Sorting 52.29% complete.
Sorting 58.10% complete.
Sorting 63.91% complete.
Sorting 69.73% complete.
Sorting 75.54% complete.
Sorting 81.35% complete.
Sorting 87.16% complete.
Sorting 92.97% complete.
Sorting 98.78% complete.
Loading database finished (elapsed time: 5.89 sec)
Reading spectra...
Ignoring 0 profile spectra.
Ignoring 0 spectra having less than 10 peaks.
Reading spectra finished (elapsed time: 45.04 sec)
Using 6 threads.
Search Parameters:
	PrecursorMassTolerance: 20.0ppm
	IsotopeError: 0,1
	TargetDecoyAnalysis: true
	FragmentationMethod: As written in the spectrum or CID if no info
	Instrument: HighRes
	Enzyme: Tryp
	Protocol: iTRAQ
	NumTolerableTermini: 2
	MinPeptideLength: 6
	MaxPeptideLength: 40
	NumMatchesPerSpec: 1
Spectrum 0-6102 (total: 6103)
pool-1-thread-5: Preprocessing spectra...
Loading built-in param file: HCD_HighRes_Tryp_iTRAQ.param
pool-1-thread-6: Preprocessing spectra...
Loading built-in param file: HCD_HighRes_Tryp_iTRAQ.param
pool-1-thread-4: Preprocessing spectra...
pool-1-thread-3: Preprocessing spectra...
pool-1-thread-2: Preprocessing spectra...
pool-1-thread-1: Preprocessing spectra...
pool-1-thread-2: Preprocessing spectra finished (elapsed time: 12.00 sec)
pool-1-thread-2: Database search...
pool-1-thread-2: Database search progress... 0.0% complete
pool-1-thread-1: Preprocessing spectra finished (elapsed time: 12.00 sec)
pool-1-thread-1: Database search...
pool-1-thread-1: Database search progress... 0.0% complete
pool-1-thread-6: Preprocessing spectra finished (elapsed time: 12.00 sec)
pool-1-thread-6: Database search...
pool-1-thread-6: Database search progress... 0.0% complete
pool-1-thread-3: Preprocessing spectra finished (elapsed time: 13.00 sec)
pool-1-thread-3: Database search...
pool-1-thread-3: Database search progress... 0.0% complete
pool-1-thread-4: Preprocessing spectra finished (elapsed time: 13.00 sec)
pool-1-thread-4: Database search...
pool-1-thread-4: Database search progress... 0.0% complete
pool-1-thread-5: Preprocessing spectra finished (elapsed time: 13.00 sec)
pool-1-thread-5: Database search...
pool-1-thread-5: Database search progress... 0.0% complete
pool-1-thread-2: Database search progress... 68.5% complete
pool-1-thread-6: Database search progress... 68.5% complete
pool-1-thread-1: Database search progress... 68.5% complete
pool-1-thread-3: Database search progress... 68.5% complete
pool-1-thread-4: Database search progress... 68.5% complete
pool-1-thread-5: Database search progress... 68.5% complete
pool-1-thread-1: Database search finished (elapsed time: 12.00 sec)
pool-1-thread-1: Computing spectral E-values...
pool-1-thread-6: Database search finished (elapsed time: 12.00 sec)
pool-1-thread-6: Computing spectral E-values...
pool-1-thread-3: Database search finished (elapsed time: 12.00 sec)
pool-1-thread-3: Computing spectral E-values...
pool-1-thread-2: Database search finished (elapsed time: 13.00 sec)
pool-1-thread-2: Computing spectral E-values...
pool-1-thread-4: Database search finished (elapsed time: 12.00 sec)
pool-1-thread-4: Computing spectral E-values...
pool-1-thread-5: Database search finished (elapsed time: 12.00 sec)
pool-1-thread-5: Computing spectral E-values...
pool-1-thread-1: Computing spectral E-values... 98.2% complete
pool-1-thread-1: Computing spectral E-values finished (elapsed time: 28.00 sec)
pool-1-thread-2: Computing spectral E-values... 98.3% complete
pool-1-thread-2: Computing spectral E-values finished (elapsed time: 49.00 sec)
pool-1-thread-6: Computing spectral E-values... 98.3% complete
pool-1-thread-6: Computing spectral E-values finished (elapsed time: 56.00 sec)
pool-1-thread-3: Computing spectral E-values... 98.3% complete
pool-1-thread-3: Computing spectral E-values finished (elapsed time: 70.00 sec)
pool-1-thread-4: Computing spectral E-values... 98.3% complete
pool-1-thread-4: Computing spectral E-values finished (elapsed time: 83.00 sec)
pool-1-thread-5: Computing spectral E-values... 98.3% complete
pool-1-thread-5: Computing spectral E-values finished (elapsed time: 92.00 sec)
Computing q-values...
Computing q-values finished (elapsed time: 0.07 sec)
Writing results...
Writing results finished (elapsed time: 6.36 sec)
MS-GF+ complete (total elapsed time: 170.82 sec)

  |                                                                            
  |.......................                                               |  33%
  ordinary text without R code


  |                                                                            
  |........................                                              |  34%
label: msgfgui (with options) 
List of 1
 $ eval: logi FALSE


  |                                                                            
  |........................                                              |  35%
   inline R code fragments


  |                                                                            
  |.........................                                             |  35%
label: idf

  |                                                                            
  |.........................                                             |  36%
  ordinary text without R code


  |                                                                            
  |..........................                                            |  37%
label: msnid1

  |                                                                            
  |...........................                                           |  38%
  ordinary text without R code


  |                                                                            
  |...........................                                           |  39%
label: msnidcols (with options) 
List of 1
 $ echo: logi FALSE


  |                                                                            
  |............................                                          |  40%
  ordinary text without R code


label: msnidnames

  |                                                                            
  |.............................                                         |  41%
  ordinary text without R code


  |                                                                            
  |.............................                                         |  42%
label: msnidtermini

  |                                                                            
  |..............................                                        |  43%
  ordinary text without R code


  |                                                                            
  |..............................                                        |  44%
label: msnidtrim

  |                                                                            
  |...............................                                       |  44%
  ordinary text without R code


  |                                                                            
  |................................                                      |  45%
label: msnidppm1

  |                                                                            
  |................................                                      |  46%
  ordinary text without R code


  |                                                                            
  |.................................                                     |  47%
label: msnidppm2

  |                                                                            
  |.................................                                     |  48%
  ordinary text without R code


  |                                                                            
  |..................................                                    |  48%
label: filt1

  |                                                                            
  |..................................                                    |  49%
  ordinary text without R code


  |                                                                            
  |...................................                                   |  50%
label: filt2

  |                                                                            
  |....................................                                  |  51%
  ordinary text without R code


  |                                                                            
  |....................................                                  |  52%
label: filt3

  |                                                                            
  |.....................................                                 |  52%
  ordinary text without R code


  |                                                                            
  |.....................................                                 |  53%
label: filt4

  |                                                                            
  |......................................                                |  54%
  ordinary text without R code


  |                                                                            
  |......................................                                |  55%
label: optim1

  |                                                                            
  |.......................................                               |  56%
  ordinary text without R code


  |                                                                            
  |........................................                              |  56%
label: optim2

  |                                                                            
  |........................................                              |  57%
  ordinary text without R code


  |                                                                            
  |.........................................                             |  58%
label: optim3

  |                                                                            
  |.........................................                             |  59%
  ordinary text without R code


  |                                                                            
  |..........................................                            |  60%
label: optim4

   inline R code fragments


  |                                                                            
  |...........................................                           |  61%
label: msnbase

  |                                                                            
  |...........................................                           |  62%
  ordinary text without R code


  |                                                                            
  |............................................                          |  63%
label: msnb2

  |                                                                            
  |.............................................                         |  64%
  ordinary text without R code


  |                                                                            
  |.............................................                         |  65%
label: addid

  |                                                                            
  |..............................................                        |  65%
  ordinary text without R code


  |                                                                            
  |..............................................                        |  66%
label: specplot

  |                                                                            
  |...............................................                       |  67%
  ordinary text without R code


  |                                                                            
  |...............................................                       |  68%
label: specplot2

  |                                                                            
  |................................................                      |  69%
  ordinary text without R code


  |                                                                            
  |.................................................                     |  69%
label: quanttab (with options) 
List of 2
 $ echo   : logi FALSE
 $ results: chr "asis"


  |                                                                            
  |.................................................                     |  70%
   inline R code fragments


  |                                                                            
  |..................................................                    |  71%
label: itraq4plot

  |                                                                            
  |..................................................                    |  72%
  ordinary text without R code


  |                                                                            
  |...................................................                   |  73%
label: quantitraq
Error in x$.self$finalize() : attempt to apply non-function
In addition: There were 50 or more warnings (use warnings() to see the first 50)

  ordinary text without R code


  |                                                                            
  |....................................................                  |  74%
label: lfms2

  |                                                                            
  |....................................................                  |  75%
   inline R code fragments


  |                                                                            
  |.....................................................                 |  76%
label: mztab (with options) 
List of 1
 $ cache: logi TRUE

trying URL 'ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2012/03/PXD000001/F063721.dat-mztab.txt'
Content type 'unknown' length 304798 bytes (297 KB)
==================================================

  |                                                                            
  |......................................................                |  77%
  ordinary text without R code


label: readmsnset2

  |                                                                            
  |.......................................................               |  78%
   inline R code fragments


  |                                                                            
  |.......................................................               |  79%
label: pure

  |                                                                            
  |........................................................              |  80%
  ordinary text without R code


  |                                                                            
  |........................................................              |  81%
label: pureplot (with options) 
List of 1
 $ echo: logi FALSE


  |                                                                            
  |.........................................................             |  81%
  ordinary text without R code


  |                                                                            
  |..........................................................            |  82%
label: norm

  |                                                                            
  |..........................................................            |  83%
  ordinary text without R code


  |                                                                            
  |...........................................................           |  84%
label: plotnorm (with options) 
List of 1
 $ echo: logi FALSE


  |                                                                            
  |...........................................................           |  85%
  ordinary text without R code


  |                                                                            
  |............................................................          |  85%
label: comb

  |                                                                            
  |............................................................          |  86%
  ordinary text without R code


  |                                                                            
  |.............................................................         |  87%
label: impute0

  |                                                                            
  |..............................................................        |  88%
  ordinary text without R code


  |                                                                            
  |..............................................................        |  89%
label: filterNA

  |                                                                            
  |...............................................................       |  90%
  ordinary text without R code


label: impute

  |                                                                            
  |................................................................      |  91%
   inline R code fragments


  |                                                                            
  |................................................................      |  92%
label: ml

  |                                                                            
  |.................................................................     |  93%
  ordinary text without R code


  |                                                                            
  |.................................................................     |  94%
label: clust

  |                                                                            
  |..................................................................    |  94%
  ordinary text without R code


  |                                                                            
  |...................................................................   |  95%
label: nont (with options) 
List of 2
 $ echo : logi FALSE
 $ cache: logi TRUE


  |                                                                            
  |...................................................................   |  96%
   inline R code fragments


  |                                                                            
  |....................................................................  |  97%
label: rols

  |                                                                            
  |....................................................................  |  98%
  ordinary text without R code


  |                                                                            
  |..................................................................... |  98%
label: rols2

  |                                                                            
  |..................................................................... |  99%
   inline R code fragments


  |                                                                            
  |......................................................................| 100%
label: si (with options) 
List of 1
 $ echo: logi FALSE


output file: proteomics.knit.md

/usr/bin/pandoc +RTS -K512m -RTS proteomics.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output proteomics.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.7-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' 

Output created: proteomics.html
> 
> 
> knitr::purl(".buildwebvig/proteomics/proteomics.Rmd", ".buildwebvig/proteomics/proteomics.R")


processing file: .buildwebvig/proteomics/proteomics.Rmd

  |                                                                       
  |                                                                 |   0%
  |                                                                       
  |.                                                                |   1%
  |                                                                       
  |.                                                                |   2%
  |                                                                       
  |..                                                               |   2%
  |                                                                       
  |..                                                               |   3%
  |                                                                       
  |...                                                              |   4%
  |                                                                       
  |...                                                              |   5%
  |                                                                       
  |....                                                             |   6%
  |                                                                       
  |.....                                                            |   7%
  |                                                                       
  |.....                                                            |   8%
  |                                                                       
  |......                                                           |   9%
  |                                                                       
  |......                                                           |  10%
  |                                                                       
  |.......                                                          |  10%
  |                                                                       
  |.......                                                          |  11%
  |                                                                       
  |........                                                         |  12%
  |                                                                       
  |........                                                         |  13%
  |                                                                       
  |.........                                                        |  14%
  |                                                                       
  |.........                                                        |  15%
  |                                                                       
  |..........                                                       |  15%
  |                                                                       
  |..........                                                       |  16%
  |                                                                       
  |...........                                                      |  17%
  |                                                                       
  |............                                                     |  18%
  |                                                                       
  |............                                                     |  19%
  |                                                                       
  |.............                                                    |  19%
  |                                                                       
  |.............                                                    |  20%
  |                                                                       
  |..............                                                   |  21%
  |                                                                       
  |..............                                                   |  22%
  |                                                                       
  |...............                                                  |  23%
  |                                                                       
  |................                                                 |  24%
  |                                                                       
  |................                                                 |  25%
  |                                                                       
  |.................                                                |  26%
  |                                                                       
  |.................                                                |  27%
  |                                                                       
  |..................                                               |  27%
  |                                                                       
  |..................                                               |  28%
  |                                                                       
  |...................                                              |  29%
  |                                                                       
  |...................                                              |  30%
  |                                                                       
  |....................                                             |  31%
  |                                                                       
  |.....................                                            |  32%
  |                                                                       
  |.....................                                            |  33%
  |                                                                       
  |......................                                           |  34%
  |                                                                       
  |.......................                                          |  35%
  |                                                                       
  |........................                                         |  36%
  |                                                                       
  |........................                                         |  37%
  |                                                                       
  |.........................                                        |  38%
  |                                                                       
  |.........................                                        |  39%
  |                                                                       
  |..........................                                       |  40%
  |                                                                       
  |...........................                                      |  41%
  |                                                                       
  |...........................                                      |  42%
  |                                                                       
  |............................                                     |  43%
  |                                                                       
  |............................                                     |  44%
  |                                                                       
  |.............................                                    |  44%
  |                                                                       
  |.............................                                    |  45%
  |                                                                       
  |..............................                                   |  46%
  |                                                                       
  |..............................                                   |  47%
  |                                                                       
  |...............................                                  |  48%
  |                                                                       
  |................................                                 |  49%
  |                                                                       
  |................................                                 |  50%
  |                                                                       
  |.................................                                |  51%
  |                                                                       
  |..................................                               |  52%
  |                                                                       
  |...................................                              |  53%
  |                                                                       
  |...................................                              |  54%
  |                                                                       
  |....................................                             |  55%
  |                                                                       
  |....................................                             |  56%
  |                                                                       
  |.....................................                            |  56%
  |                                                                       
  |.....................................                            |  57%
  |                                                                       
  |......................................                           |  58%
  |                                                                       
  |......................................                           |  59%
  |                                                                       
  |.......................................                          |  60%
  |                                                                       
  |........................................                         |  61%
  |                                                                       
  |........................................                         |  62%
  |                                                                       
  |.........................................                        |  63%
  |                                                                       
  |.........................................                        |  64%
  |                                                                       
  |..........................................                       |  65%
  |                                                                       
  |...........................................                      |  66%
  |                                                                       
  |............................................                     |  67%
  |                                                                       
  |............................................                     |  68%
  |                                                                       
  |.............................................                    |  69%
  |                                                                       
  |..............................................                   |  70%
  |                                                                       
  |..............................................                   |  71%
  |                                                                       
  |...............................................                  |  72%
  |                                                                       
  |...............................................                  |  73%
  |                                                                       
  |................................................                 |  73%
  |                                                                       
  |................................................                 |  74%
  |                                                                       
  |.................................................                |  75%
  |                                                                       
  |.................................................                |  76%
  |                                                                       
  |..................................................               |  77%
  |                                                                       
  |...................................................              |  78%
  |                                                                       
  |...................................................              |  79%
  |                                                                       
  |....................................................             |  80%
  |                                                                       
  |....................................................             |  81%
  |                                                                       
  |.....................................................            |  81%
  |                                                                       
  |.....................................................            |  82%
  |                                                                       
  |......................................................           |  83%
  |                                                                       
  |.......................................................          |  84%
  |                                                                       
  |.......................................................          |  85%
  |                                                                       
  |........................................................         |  85%
  |                                                                       
  |........................................................         |  86%
  |                                                                       
  |.........................................................        |  87%
  |                                                                       
  |.........................................................        |  88%
  |                                                                       
  |..........................................................       |  89%
  |                                                                       
  |..........................................................       |  90%
  |                                                                       
  |...........................................................      |  90%
  |                                                                       
  |...........................................................      |  91%
  |                                                                       
  |............................................................     |  92%
  |                                                                       
  |............................................................     |  93%
  |                                                                       
  |.............................................................    |  94%
  |                                                                       
  |..............................................................   |  95%
  |                                                                       
  |..............................................................   |  96%
  |                                                                       
  |...............................................................  |  97%
  |                                                                       
  |...............................................................  |  98%
  |                                                                       
  |................................................................ |  98%
  |                                                                       
  |................................................................ |  99%
  |                                                                       
  |.................................................................| 100%
output file: .buildwebvig/proteomics/proteomics.R

[1] ".buildwebvig/proteomics/proteomics.R"
> 
>