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INSTALL report for DEXSeq on tokay2

This page was generated on 2018-10-17 08:35:26 -0400 (Wed, 17 Oct 2018).

Package 379/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DEXSeq 1.26.0
Alejandro Reyes
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/DEXSeq
Branch: RELEASE_3_7
Last Commit: 1b16e47
Last Changed Date: 2018-04-30 10:35:19 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DEXSeq
Version: 1.26.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/DEXSeq_1.26.0.tar.gz && rm -rf DEXSeq.buildbin-libdir && mkdir DEXSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEXSeq.buildbin-libdir DEXSeq_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL DEXSeq_1.26.0.zip && rm DEXSeq_1.26.0.tar.gz DEXSeq_1.26.0.zip
StartedAt: 2018-10-16 20:32:03 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 20:33:00 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 57.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/DEXSeq_1.26.0.tar.gz && rm -rf DEXSeq.buildbin-libdir && mkdir DEXSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEXSeq.buildbin-libdir DEXSeq_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL DEXSeq_1.26.0.zip && rm DEXSeq_1.26.0.tar.gz DEXSeq_1.26.0.zip
###
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install for i386

* installing *source* package 'DEXSeq' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DEXSeq'
    finding HTML links ... done
    DEXSeq-defunct                          html  
    DEXSeq                                  html  
    DEXSeqDataSet                           html  
    DEXSeqHTML                              html  
    DEXSeqResults                           html  
    accessors                               html  
    counts                                  html  
    estimateDispersions                     html  
    estimateExonFoldChanges                 html  
    estimateSizeFactors                     html  
    methods-gr                              html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpGU6axZ/R.INSTALL17bc78491b/DEXSeq/man/methods-gr.Rd:32: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpGU6axZ/R.INSTALL17bc78491b/DEXSeq/man/methods-gr.Rd:36: file link 'findOverlaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
    otherMethods                            html  
    perGeneQValue                           html  
    plotDEXSeq                              html  
    plotDispEsts                            html  
    plotMA                                  html  
    testForDEU                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'DEXSeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DEXSeq' as DEXSeq_1.26.0.zip
* DONE (DEXSeq)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'DEXSeq' successfully unpacked and MD5 sums checked
In R CMD INSTALL