Package: supraHex

Version: 1.18.0

Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings supraHex_1.18.0.tar.gz

StartedAt: 2018-10-16 04:03:42 -0400 (Tue, 16 Oct 2018)

EndedAt: 2018-10-16 04:04:21 -0400 (Tue, 16 Oct 2018)

EllapsedTime: 39.1 seconds

RetCode: 0

Status:  OK

CheckDir: supraHex.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings supraHex_1.18.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/supraHex.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.18.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL supraHex
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* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘supraHex’ ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (supraHex)

name	user	system	elapsed
sBMH	0.116	0.000	0.115
sCompReorder	0.488	0.028	0.516
sDistance	0.064	0.000	0.065
sDmat	0.092	0.000	0.089
sDmatCluster	0.132	0.000	0.135
sDmatMinima	0.092	0.000	0.091
sHexDist	0.000	0.000	0.003
sHexGrid	0.000	0.000	0.002
sHexGridVariant	0.004	0.000	0.005
sHexPolygon	0.000	0.000	0.002
sInitial	0.004	0.000	0.002
sMapOverlay	0.144	0.000	0.144
sNeighAny	0.000	0.004	0.005
sNeighDirect	0.000	0.000	0.003
sPipeline	1.080	0.000	1.084
sTopology	0.012	0.000	0.014
sTrainBatch	0.024	0.000	0.026
sTrainSeq	0.264	0.000	0.264
sTrainology	0.004	0.000	0.002
sWriteData	0.112	0.000	0.111
visColoralpha	0.004	0.004	0.006
visColorbar	0.032	0.000	0.031
visColormap	0.008	0.000	0.006
visCompReorder	0.576	0.004	0.582
visDmatCluster	0.204	0.000	0.204
visDmatHeatmap	0.140	0.008	0.147
visHeatmap	0.080	0.000	0.081
visHeatmapAdv	0.380	0.000	0.378
visHexAnimate	0.000	0.000	0.002
visHexBarplot	0.236	0.004	0.241
visHexComp	0.072	0.000	0.073
visHexGrid	0.072	0.000	0.074
visHexMapping	0.74	0.00	0.74
visHexMulComp	0.592	0.008	0.602
visHexPattern	1.172	0.028	1.201
visKernels	0.008	0.004	0.010
visTreeBSclust	0.060	0.004	0.063
visTreeBootstrap	0.148	0.000	0.148
visVp	0.02	0.00	0.02