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BUILD report for phenoDist on malbec2

This page was generated on 2018-10-17 08:23:19 -0400 (Wed, 17 Oct 2018).

Package 1086/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
phenoDist 1.28.0
Xian Zhang
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/phenoDist
Branch: RELEASE_3_7
Last Commit: 7b9bf9d
Last Changed Date: 2018-04-30 10:35:15 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK [ ERROR ] skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: phenoDist
Version: 1.28.0
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data phenoDist
StartedAt: 2018-10-15 19:12:46 -0400 (Mon, 15 Oct 2018)
EndedAt: 2018-10-15 19:13:23 -0400 (Mon, 15 Oct 2018)
EllapsedTime: 36.5 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data phenoDist
###
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* checking for file ‘phenoDist/DESCRIPTION’ ... OK
* preparing ‘phenoDist’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: EBImage

Attaching package: ‘EBImage’

The following object is masked _by_ ‘.GlobalEnv’:

    display

Loading required package: cellHTS2
Loading required package: RColorBrewer
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: ‘Biobase’

The following object is masked from ‘package:EBImage’:

    channel

Loading required package: genefilter
Loading required package: splots
Loading required package: vsn
Loading required package: hwriter
Loading required package: locfit
locfit 1.5-9.1 	 2013-03-22
Loading required package: grid
trying URL 'http://www.ebi.ac.uk/huber-srv/cellmorph/kimorph//conf/imageconf.txt'
Warning in fileHTS(x, type = type, ..., access = access) :
  cannot download the file pointed by "http://www.ebi.ac.uk/huber-srv/cellmorph/kimorph//conf/imageconf.txt" to the location "/tmp/Rtmpw0T7Hf/kimorph/conf/imageconf.txt"

Error: processing vignette 'phenoDist.Rnw' failed with diagnostics:
 chunk 3 (label = imageHTSSetup) 
Error in readHTS(x, type = "file", filename = filename, access = access,  : 
  cannot find filename=/tmp/Rtmpw0T7Hf/kimorph/conf/imageconf.txt
Execution halted