Package: epivizrServer

Version: 1.8.1

Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:epivizrServer.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings epivizrServer_1.8.1.tar.gz

StartedAt: 2018-10-16 00:14:53 -0400 (Tue, 16 Oct 2018)

EndedAt: 2018-10-16 00:15:12 -0400 (Tue, 16 Oct 2018)

EllapsedTime: 19.0 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: epivizrServer.Rcheck

Warnings: 1

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:epivizrServer.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings epivizrServer_1.8.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/epivizrServer.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘epivizrServer/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘epivizrServer’ version ‘1.8.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘epivizrServer’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'json_writer':
json_writer
  Code: function(x, indent = 0, method = "C")
  Docs: function(x, method = "C")
  Argument names in code not in docs:
    indent
  Mismatches in argument names:
    Position: 2 Code: indent Docs: method

* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  ‘/home/biocbuild/bbs-3.7-bioc/meat/epivizrServer.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL epivizrServer
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘epivizrServer’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (epivizrServer)

R version 3.5.1 Patched (2018-07-12 r74967) -- "Feather Spray"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(epivizrServer)
> 
> test_check("epivizrServer")
createTcpServer: address already in use
createTcpServer: address already in use
.══ testthat results  ═══════════════════════════════════════════════════════════
OK: 36 SKIPPED: 3 FAILED: 0
> 
> proc.time()
   user  system elapsed 
  0.576   0.056   0.622 

name	user	system	elapsed
EpivizServer-class	0.048	0.000	0.050
createServer	0.008	0.000	0.005
json_writer	0.004	0.000	0.003