David Fischer
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/cosmiq |
| Branch: RELEASE_3_7 |
| Last Commit: 881f21c |
| Last Changed Date: 2018-04-30 10:35:33 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:26:15 -0400 (Wed, 17 Oct 2018).
| Package 312/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| cosmiq 1.14.0 David Fischer
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | [ ERROR ] | skipped | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
| Package: cosmiq |
| Version: 1.14.0 |
| Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data cosmiq |
| StartedAt: 2018-10-15 20:04:11 -0400 (Mon, 15 Oct 2018) |
| EndedAt: 2018-10-15 20:07:21 -0400 (Mon, 15 Oct 2018) |
| EllapsedTime: 190.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data cosmiq
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* checking for file ‘cosmiq/DESCRIPTION’ ... OK
* preparing ‘cosmiq’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: Rcpp
Create profile matrix with method 'bin' and step 1 ... OK
Combining spectra ...
1 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
2 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
3 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
4 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
5 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
6 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
7 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
8 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
9 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
10 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
11 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
12 of 12 done.
Detecting mz peaks on master spectrum ...
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Creating EIC matrix ...
Create profile matrix with method 'bin' and step 1 ... OK
1 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
2 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
3 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
4 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
5 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
6 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
7 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
8 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
9 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
10 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
11 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
12 of 12 done.
Detecting chromatographic peaks from EIC matrix ...
Detecting mz peaks on master spectrum ...
1 of 8 Peaknum = 4
Detecting mz peaks on master spectrum ...
2 of 8 Peaknum = 7
Detecting mz peaks on master spectrum ...
3 of 8 Peaknum = 8
Detecting mz peaks on master spectrum ...
4 of 8 Peaknum = 11
Detecting mz peaks on master spectrum ...
5 of 8 Peaknum = 15
Detecting mz peaks on master spectrum ...
6 of 8 Peaknum = 17
Detecting mz peaks on master spectrum ...
7 of 8 Peaknum = 21
Detecting mz peaks on master spectrum ...
8 of 8 Peaknum = 26
Quantifying mz/RT features ...
Create profile matrix with method 'bin' and step 1 ... OK
1 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
2 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
3 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
4 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
5 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
6 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
7 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
8 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
9 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
10 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
11 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
12 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
Combining spectra ...
1 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
2 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
3 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
4 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
5 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
6 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
7 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
8 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
9 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
10 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
11 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
12 of 12 done.
Detecting mz peaks on master spectrum ...
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Create profile matrix with method 'bin' and step 1 ... OK
Creating EIC matrix ...
Create profile matrix with method 'bin' and step 1 ... OK
1 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
2 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
3 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
4 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
5 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
6 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
7 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
8 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
9 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
10 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
11 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
12 of 12 done.
Detecting chromatographic peaks from EIC matrix ...
Detecting mz peaks on master spectrum ...
1 of 8 Peaknum = 4
Detecting mz peaks on master spectrum ...
2 of 8 Peaknum = 7
Detecting mz peaks on master spectrum ...
3 of 8 Peaknum = 8
Detecting mz peaks on master spectrum ...
4 of 8 Peaknum = 11
Detecting mz peaks on master spectrum ...
5 of 8 Peaknum = 15
Detecting mz peaks on master spectrum ...
6 of 8 Peaknum = 17
Detecting mz peaks on master spectrum ...
7 of 8 Peaknum = 21
Detecting mz peaks on master spectrum ...
8 of 8 Peaknum = 26
Quantifying mz/RT features ...
Create profile matrix with method 'bin' and step 1 ... OK
1 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
2 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
3 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
4 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
5 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
6 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
7 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
8 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
9 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
10 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
11 of 12 done.
Create profile matrix with method 'bin' and step 1 ... OK
12 of 12 done.
Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
Running 'texi2dvi' on 'poster.tex' failed.
LaTeX errors:
! Dimension too large.
\balance@columns ...o\z@ \@tempdima \ht \mult@box
\advance \@tempdima \dp \m...
l.296 \end{multicols}
! Dimension too large.
\balance@columns ...o\z@ \@tempdima \ht \mult@box
\advance \@tempdima \dp \m...
l.395 \end{multicols}
Calls: <Anonymous> -> texi2pdf -> texi2dvi
Execution halted