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CHECK report for ROC on malbec2

This page was generated on 2018-10-17 08:20:57 -0400 (Wed, 17 Oct 2018).

Package 1266/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ROC 1.56.0
Vince Carey
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/ROC
Branch: RELEASE_3_7
Last Commit: 2d62ec3
Last Changed Date: 2018-04-30 10:34:54 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ROC
Version: 1.56.0
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:ROC.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings ROC_1.56.0.tar.gz
StartedAt: 2018-10-16 03:23:34 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 03:23:50 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 15.2 seconds
RetCode: 0
Status:  OK 
CheckDir: ROC.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:ROC.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings ROC_1.56.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/ROC.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ROC/DESCRIPTION’ ... OK
* this is package ‘ROC’ version ‘1.56.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ROC’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
AUCi: no visible global function definition for ‘integrate’
ROC: no visible global function definition for ‘approx’
pAUCi: no visible global function definition for ‘integrate’
trapezint: no visible global function definition for ‘approx’
plot,rocc: no visible global function definition for ‘text’
Undefined global functions or variables:
  approx integrate text
Consider adding
  importFrom("graphics", "text")
  importFrom("stats", "approx", "integrate")
to your NAMESPACE file.
* checking Rd files ... NOTE
prepare_Rd: AUC.Rd:38-39: Dropping empty section \value
prepare_Rd: AUC.Rd:48: Dropping empty section \note
prepare_Rd: rocdemo.sca.Rd:40: Dropping empty section \note
prepare_Rd: rocdemo.sca.Rd:38: Dropping empty section \references
prepare_Rd: trapezint.Rd:23: Dropping empty section \note
prepare_Rd: trapezint.Rd:22: Dropping empty section \author
prepare_Rd: trapezint.Rd:21: Dropping empty section \references
prepare_Rd: trapezint.Rd:24: Dropping empty section \seealso
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  ‘/home/biocbuild/bbs-3.7-bioc/meat/ROC.Rcheck/00check.log’
for details.



Installation output

ROC.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL ROC
###
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* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘ROC’ ...
** libs
g++  -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c ROC.cc -o ROC.o
g++ -shared -L/home/biocbuild/bbs-3.7-bioc/R/lib -L/usr/local/lib -o ROC.so ROC.o -L/home/biocbuild/bbs-3.7-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.7-bioc/R/library/ROC/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ROC)

Tests output


Example timings

ROC.Rcheck/ROC-Ex.timings

nameusersystemelapsed
AUC0.0120.0000.012
plot-methods0.0080.0000.006
rocc-class0.0160.0000.017
rocdemo.sca0.6440.0000.648
trapezint0.0000.0000.001