Back to Multiple platform build/check report for BioC 3.7
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

CHECK report for PowerExplorer on malbec2

This page was generated on 2018-10-17 08:31:35 -0400 (Wed, 17 Oct 2018).

Package 1115/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PowerExplorer 1.0.1
Xu Qiao
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/PowerExplorer
Branch: RELEASE_3_7
Last Commit: 156566c
Last Changed Date: 2018-07-04 04:47:18 -0400 (Wed, 04 Jul 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: PowerExplorer
Version: 1.0.1
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:PowerExplorer.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings PowerExplorer_1.0.1.tar.gz
StartedAt: 2018-10-16 02:47:05 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 02:50:43 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 217.8 seconds
RetCode: 0
Status:  OK 
CheckDir: PowerExplorer.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:PowerExplorer.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings PowerExplorer_1.0.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/PowerExplorer.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PowerExplorer/DESCRIPTION’ ... OK
* this is package ‘PowerExplorer’ version ‘1.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PowerExplorer’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
predictPower  33.532  0.000  33.617
estimatePower 24.044  0.028  24.105
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

PowerExplorer.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL PowerExplorer
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘PowerExplorer’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (PowerExplorer)

Tests output


Example timings

PowerExplorer.Rcheck/PowerExplorer-Ex.timings

nameusersystemelapsed
estimatePower24.044 0.02824.105
exampleObject0.6480.0080.656
exampleProteomicsData0.0000.0000.003
exampleRNASeqData0.0040.0000.002
listEstPwr0.0520.0080.059
listPredPwr0.1080.0000.107
plotEstPwr1.0360.0041.042
plotPredPwr2.4960.0162.516
predictPower33.532 0.00033.617
show0.0560.0000.055