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BUILD report for PAnnBuilder on malbec2

This page was generated on 2018-10-17 08:22:40 -0400 (Wed, 17 Oct 2018).

Package 1050/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PAnnBuilder 1.44.0
Li Hong
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/PAnnBuilder
Branch: RELEASE_3_7
Last Commit: fb00bda
Last Changed Date: 2018-04-30 10:35:10 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK [ ERROR ] skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: PAnnBuilder
Version: 1.44.0
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data PAnnBuilder
StartedAt: 2018-10-15 18:58:51 -0400 (Mon, 15 Oct 2018)
EndedAt: 2018-10-15 18:59:01 -0400 (Mon, 15 Oct 2018)
EllapsedTime: 9.9 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data PAnnBuilder
###
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* checking for file ‘PAnnBuilder/DESCRIPTION’ ... OK
* preparing ‘PAnnBuilder’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: RSQLite
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: ‘S4Vectors’

The following object is masked from ‘package:base’:

    expand.grid

Warning: Package 'PAnnBuilder' is deprecated and will be removed from
  Bioconductor version 3.7

Error: processing vignette 'PAnnBuilder.Rnw' failed with diagnostics:
 chunk 6 (label = exampleLoad1) 
Error in library(org.Hs.ipi.db) : 
  there is no package called ‘org.Hs.ipi.db’
Execution halted