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INSTALL report for GoogleGenomics on malbec2

This page was generated on 2018-10-17 08:27:29 -0400 (Wed, 17 Oct 2018).

Package 629/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GoogleGenomics 2.2.0
Siddhartha Bagaria
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/GoogleGenomics
Branch: RELEASE_3_7
Last Commit: 65aee17
Last Changed Date: 2018-04-30 10:35:36 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GoogleGenomics
Version: 2.2.0
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL GoogleGenomics
StartedAt: 2018-10-15 18:24:14 -0400 (Mon, 15 Oct 2018)
EndedAt: 2018-10-15 18:24:37 -0400 (Mon, 15 Oct 2018)
EllapsedTime: 23.3 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL GoogleGenomics
###
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* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘GoogleGenomics’ ...
/home/biocbuild/bbs-3.7-bioc/R/bin/Rcmd: 62: exec: CONFIG: not found
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking for pkg-config... 0
checking if ProtoBuf version >= 3.0.0... "no"
configure: WARNING: "
gRPC installation could not be found,
or protocol buffer library is not >= 3.0.0.
If your installation is in a non-standard location,
please see installation instructions at
https://github.com/Bioconductor/GoogleGenomics/blob/master/README.rst
"
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.7-bioc/R/include" -DNDEBUG -I/usr/local/include -I.  -I/usr/local/include   -fpic  -g -O2 -c init.cc -o init.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.7-bioc/R/lib -L/usr/local/lib -o GoogleGenomics.so init.o -L/home/biocbuild/bbs-3.7-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.7-bioc/R/library/GoogleGenomics/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Configured public API key.
* DONE (GoogleGenomics)