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INSTALL report for CATALYST on tokay2

This page was generated on 2018-10-17 08:43:49 -0400 (Wed, 17 Oct 2018).

Package 191/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CATALYST 1.4.2
Helena L. Crowell
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/CATALYST
Branch: RELEASE_3_7
Last Commit: 668abb2
Last Changed Date: 2018-05-18 10:28:54 -0400 (Fri, 18 May 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CATALYST
Version: 1.4.2
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/CATALYST_1.4.2.tar.gz && rm -rf CATALYST.buildbin-libdir && mkdir CATALYST.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CATALYST.buildbin-libdir CATALYST_1.4.2.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL CATALYST_1.4.2.zip && rm CATALYST_1.4.2.tar.gz CATALYST_1.4.2.zip
StartedAt: 2018-10-16 20:16:15 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 20:18:17 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 121.1 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/CATALYST_1.4.2.tar.gz && rm -rf CATALYST.buildbin-libdir && mkdir CATALYST.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CATALYST.buildbin-libdir CATALYST_1.4.2.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL CATALYST_1.4.2.zip && rm CATALYST_1.4.2.tar.gz CATALYST_1.4.2.zip
###
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100 3577k  100 3577k    0     0  21.5M      0 --:--:-- --:--:-- --:--:-- 22.3M

install for i386

* installing *source* package 'CATALYST' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CATALYST'
    finding HTML links ... done
    adaptSpillmat                           html  
    applyCutoffs                            html  
    assignPrelim                            html  
    finding level-2 HTML links ... done

    cluster                                 html  
    compCytof                               html  
    computeSpillmat                         html  
    concatFCS                               html  
    daFrame-class                           html  
    daFrame-methods                         html  
    data                                    html  
    dbFrame-class                           html  
    dbFrame-methods                         html  
    estCutoffs                              html  
    extractClusters                         html  
    guessPanel                              html  
    launchGUI                               html  
    mergeClusters                           html  
    normCytof                               html  
    outFCS                                  html  
    outFrames                               html  
    plotAbundances                          html  
    plotClusterHeatmap                      html  
    plotCodes                               html  
    plotCounts                              html  
    plotDiffHeatmap                         html  
    plotEvents                              html  
    plotExprHeatmap                         html  
    plotExprs                               html  
    plotMDS                                 html  
    plotMahal                               html  
    plotMedExprs                            html  
    plotNRS                                 html  
    plotSNE                                 html  
    plotSpillmat                            html  
    plotYields                              html  
    tSNE                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'CATALYST' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CATALYST' as CATALYST_1.4.2.zip
* DONE (CATALYST)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'CATALYST' successfully unpacked and MD5 sums checked
In R CMD INSTALL