Back to Multiple platform build/check report for BioC 3.6 experimental data

CHECK report for aracne.networks on malbec1

This page was generated on 2018-04-12 12:50:15 -0400 (Thu, 12 Apr 2018).

Package 16/326HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
aracne.networks 1.4.0
Federico M. Giorgi , Mariano Alvarez
Snapshot Date: 2018-04-12 07:35:06 -0400 (Thu, 12 Apr 2018)
URL: https://git.bioconductor.org/packages/aracne.networks
Branch: RELEASE_3_6
Last Commit: 94d0423
Last Changed Date: 2017-10-30 11:58:35 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: aracne.networks
Version: 1.4.0
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings aracne.networks_1.4.0.tar.gz
StartedAt: 2018-04-12 09:40:33 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 09:49:19 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 525.2 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: aracne.networks.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings aracne.networks_1.4.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.6-data-experiment/meat/aracne.networks.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘aracne.networks/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘aracne.networks’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘aracne.networks’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 203.4Mb
  sub-directories of 1Mb or more:
    data  203.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                  old_size new_size compress
  regulonblca.rda    8.2Mb    6.9Mb       xz
  regulonbrca.rda    5.7Mb    4.7Mb       xz
  reguloncesc.rda    9.6Mb    8.0Mb       xz
  reguloncoad.rda    7.0Mb    5.8Mb       xz
  regulonesca.rda    8.7Mb    7.0Mb       xz
  regulongbm.rda     9.2Mb    7.1Mb       xz
  regulonhnsc.rda    7.2Mb    6.0Mb       xz
  regulonkirc.rda    5.9Mb    4.9Mb       xz
  regulonkirp.rda    7.8Mb    6.5Mb       xz
  regulonlaml.rda    8.8Mb    7.0Mb       xz
  regulonlihc.rda    8.0Mb    6.7Mb       xz
  regulonluad.rda    6.8Mb    5.7Mb       xz
  regulonlusc.rda    7.7Mb    6.5Mb       xz
  regulonnet.rda    12.1Mb   10.1Mb       xz
  regulonov.rda     10.5Mb    8.6Mb       xz
  regulonpaad.rda    8.7Mb    7.1Mb       xz
  regulonpcpg.rda    9.9Mb    7.8Mb       xz
  regulonprad.rda    5.6Mb    4.7Mb       xz
  regulonread.rda    9.4Mb    7.6Mb       xz
  regulonsarc.rda    8.8Mb    7.2Mb       xz
  regulonstad.rda    9.7Mb    8.1Mb       xz
  regulontgct.rda    7.7Mb    6.3Mb       xz
  regulonthca.rda    5.2Mb    4.3Mb       xz
  regulonthym.rda    6.7Mb    5.3Mb       xz
  regulonucec.rda    8.2Mb    6.9Mb       xz
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.6-data-experiment/meat/aracne.networks.Rcheck/00check.log’
for details.



Installation output

aracne.networks.Rcheck/00install.out

* installing *source* package ‘aracne.networks’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (aracne.networks)

Tests output


Example timings

aracne.networks.Rcheck/aracne.networks-Ex.timings

nameusersystemelapsed
aracne.networks-package2.6560.0402.702
regulonblca2.1200.0202.143
regulonbrca1.6200.0041.625
reguloncesc2.4640.0162.481
reguloncoad1.7440.0041.749
regulonesca2.1360.0082.146
regulongbm2.2400.0082.251
regulonhnsc2.1600.0082.168
regulonkirc1.9960.0122.010
regulonkirp1.8920.0121.904
regulonlaml2.4520.0202.473
regulonlihc2.0600.0122.075
regulonluad1.8400.0241.867
regulonlusc2.2080.0042.213
regulonnet3.1480.0363.187
regulonov2.5720.0242.598
regulonpaad2.3280.0162.348
regulonpcpg2.6200.0282.650
regulonprad1.4520.0121.467
regulonread2.2920.0002.291
regulonsarc2.0360.0082.046
regulonstad2.4200.0122.431
regulontgct1.9800.0202.004
regulonthca1.6480.0001.651
regulonthym1.9560.0001.956
regulonucec2.1800.0322.213
write.regulon1.4760.0081.486