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BioC experimental data: CHECK report for PREDAsampledata on malbec1

This page was generated on 2017-08-15 15:11:13 -0400 (Tue, 15 Aug 2017).

Package 227/317HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PREDAsampledata 0.17.0
Francesco Ferrari
Snapshot Date: 2017-08-15 09:00:08 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/PREDAsampledata
Last Changed Rev: 4157 / Revision: 4227
Last Changed Date: 2017-04-24 16:19:55 -0400 (Mon, 24 Apr 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: PREDAsampledata
Version: 0.17.0
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings PREDAsampledata_0.17.0.tar.gz
StartedAt: 2017-08-15 11:00:52 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 11:02:58 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 126.2 seconds
RetCode: 0
Status:  OK 
CheckDir: PREDAsampledata.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings PREDAsampledata_0.17.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.6-data-experiment/meat/PREDAsampledata.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PREDAsampledata/DESCRIPTION’ ... OK
* this is package ‘PREDAsampledata’ version ‘0.17.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PREDAsampledata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 80.4Mb
  sub-directories of 1Mb or more:
    data        59.6Mb
    sampledata  20.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  ‘Biobase’ ‘PREDA’ ‘affy’ ‘annotate’ ‘methods’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
              user system elapsed
AffybatchRCC 7.136  0.096   7.256
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.6-data-experiment/meat/PREDAsampledata.Rcheck/00check.log’
for details.


PREDAsampledata.Rcheck/00install.out:

* installing *source* package ‘PREDAsampledata’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (PREDAsampledata)

PREDAsampledata.Rcheck/PREDAsampledata-Ex.timings:

nameusersystemelapsed
AffybatchRCC7.1360.0967.256
ExpressionSetRCC0.8840.0120.899
GEanalysisResults0.2000.0080.209
SODEGIRCNDataForPREDA0.7400.0160.757
SODEGIRCNanalysisResults0.3240.0080.331
SODEGIRGEDataForPREDA0.3160.0000.316
SODEGIRGEanalysisResults0.6000.0240.625