Stefanie Scheid
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/twilight |
| Branch: RELEASE_3_6 |
| Last Commit: 9b7d9f8 |
| Last Changed Date: 2017-10-30 12:39:03 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:17:39 -0400 (Thu, 12 Apr 2018).
| Package 1432/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| twilight 1.54.0 Stefanie Scheid
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: twilight |
| Version: 1.54.0 |
| Command: rm -rf twilight.buildbin-libdir && mkdir twilight.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/twilight_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=twilight.buildbin-libdir --merge-multiarch twilight_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL twilight_1.54.0.zip && rm twilight_1.54.0.tar.gz twilight_1.54.0.zip |
| StartedAt: 2018-04-11 18:22:22 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:23:03 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 41.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf twilight.buildbin-libdir && mkdir twilight.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/twilight_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=twilight.buildbin-libdir --merge-multiarch twilight_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL twilight_1.54.0.zip && rm twilight_1.54.0.tar.gz twilight_1.54.0.zip
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install for i386
* installing *source* package 'twilight' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c confidence.line.c -o confidence.line.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c correlation.c -o correlation.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c kstest.c -o kstest.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c sep.c -o sep.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c twosample.perm.c -o twosample.perm.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c twosample.single.c -o twosample.single.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o twilight.dll tmp.def confidence.line.o correlation.o kstest.o sep.o twosample.perm.o twosample.single.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/twilight.buildbin-libdir/twilight/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'twilight'
finding HTML links ... done
exfdr html
expval html
plot.twilight html
print.twilight html
twilight html
twilight.combi html
twilight.filtering html
twilight.getlambda html
twilight.getmatrix html
twilight.permute.pair html
twilight.permute.unpair html
twilight.pval html
twilight.teststat html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'twilight' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c confidence.line.c -o confidence.line.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c correlation.c -o correlation.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c kstest.c -o kstest.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c sep.c -o sep.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c twosample.perm.c -o twosample.perm.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c twosample.single.c -o twosample.single.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o twilight.dll tmp.def confidence.line.o correlation.o kstest.o sep.o twosample.perm.o twosample.single.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/twilight.buildbin-libdir/twilight/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'twilight' as twilight_1.54.0.zip
* DONE (twilight)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'twilight' successfully unpacked and MD5 sums checked
In R CMD INSTALL