Thomas Girke
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/systemPipeR |
| Branch: RELEASE_3_6 |
| Last Commit: d86801c |
| Last Changed Date: 2017-10-30 12:40:37 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:24:57 -0400 (Thu, 12 Apr 2018).
| Package 1382/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| systemPipeR 1.12.0 Thomas Girke
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: systemPipeR |
| Version: 1.12.0 |
| Command: cd systemPipeR.buildbin-libdir/systemPipeR && zip -r ../../systemPipeR_1.12.0.zip . & cd ../.. |
| StartedAt: 2018-04-12 05:05:47 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 05:06:30 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 42.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: systemPipeR_1.12.0.zip |
| PackageFileSize: 8.914 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd systemPipeR.buildbin-libdir/systemPipeR && zip -r ../../systemPipeR_1.12.0.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: CITATION (332 bytes security) (deflated 7%) adding: DESCRIPTION (332 bytes security) (deflated 46%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/index.html (332 bytes security) (deflated 80%) adding: doc/systemPipeChIPseq.pdf (332 bytes security) (deflated 11%) adding: doc/systemPipeChIPseq.R (332 bytes security) (deflated 73%) adding: doc/systemPipeChIPseq.Rnw (332 bytes security) (deflated 65%) adding: doc/systemPipeR.html (332 bytes security) (deflated 47%) adding: doc/systemPipeR.R (332 bytes security) (deflated 77%) adding: doc/systemPipeR.Rmd (332 bytes security) (deflated 71%) adding: doc/systemPipeRIBOseq.pdf (332 bytes security) (deflated 16%) adding: doc/systemPipeRIBOseq.R (332 bytes security) (deflated 75%) adding: doc/systemPipeRIBOseq.Rnw (332 bytes security) (deflated 67%) adding: doc/systemPipeRNAseq.pdf (332 bytes security) (deflated 14%) adding: doc/systemPipeRNAseq.R (332 bytes security) (deflated 70%) adding: doc/systemPipeRNAseq.Rnw (332 bytes security) (deflated 63%) adding: doc/systemPipeVARseq.pdf (332 bytes security) (deflated 11%) adding: doc/systemPipeVARseq.R (332 bytes security) (deflated 81%) adding: doc/systemPipeVARseq.Rnw (332 bytes security) (deflated 70%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/.BatchJobs.R (332 bytes security) (deflated 19%) adding: extdata/alignStats.xls (332 bytes security) (deflated 62%) adding: extdata/annotate_peaks.param (332 bytes security) (deflated 44%) adding: extdata/annotate_vars.param (332 bytes security) (deflated 43%) adding: extdata/bowtiePE.param (332 bytes security) (deflated 42%) adding: extdata/bowtieSE.param (332 bytes security) (deflated 41%) adding: extdata/bwa.param (332 bytes security) (deflated 43%) adding: extdata/countDFeByg.xls (332 bytes security) (deflated 61%) adding: extdata/count_rangesets.param (332 bytes security) (deflated 44%) adding: extdata/custom_Fct.R (332 bytes security) (deflated 58%) adding: extdata/filter_gatk.param (332 bytes security) (deflated 43%) adding: extdata/filter_sambcf.param (332 bytes security) (deflated 43%) adding: extdata/filter_vartools.param (332 bytes security) (deflated 43%) adding: extdata/gatk.param (332 bytes security) (deflated 50%) adding: extdata/gatk_run.sh (332 bytes security) (deflated 61%) adding: extdata/gsnap.param (332 bytes security) (deflated 43%) adding: extdata/macs2.param (332 bytes security) (deflated 45%) adding: extdata/macs2_noinput.param (332 bytes security) (deflated 45%) adding: extdata/Makefile (332 bytes security) (deflated 62%) adding: extdata/rpkmDFeByg.xls (332 bytes security) (deflated 49%) adding: extdata/rsubread.param (332 bytes security) (deflated 43%) adding: extdata/rundiff.param (332 bytes security) (deflated 43%) adding: extdata/sambcf.param (332 bytes security) (deflated 49%) adding: extdata/sambcf_run.sh (332 bytes security) (deflated 54%) adding: extdata/slides/ (372 bytes security) (stored 0%) adding: extdata/slides/bibtex.bib (332 bytes security) (deflated 69%) adding: extdata/slides/images/ (372 bytes security) (stored 0%) adding: extdata/slides/images/SystemPipeR_Workflow.png (332 bytes security) (deflated 1%) adding: extdata/slides/logo.png (332 bytes security) (deflated 1%) adding: extdata/slides/systemPipeRslides.html (332 bytes security) (deflated 43%) adding: extdata/slides/systemPipeRslides.R (332 bytes security) (deflated 70%) adding: extdata/slides/systemPipeRslides.Rmd (332 bytes security) (deflated 64%) adding: extdata/targets.txt (332 bytes security) (deflated 65%) adding: extdata/targetsPE.txt (332 bytes security) (deflated 70%) adding: extdata/targetsPE_chip.txt (332 bytes security) (deflated 69%) adding: extdata/targets_chip.txt (332 bytes security) (deflated 64%) adding: extdata/tophat.param (332 bytes security) (deflated 42%) adding: extdata/torque.tmpl (332 bytes security) (deflated 49%) adding: extdata/trim.param (332 bytes security) (deflated 43%) adding: extdata/trimPE.param (332 bytes security) (deflated 49%) adding: extdata/vartools.param (332 bytes security) (deflated 43%) adding: extdata/vignette_archive/ (372 bytes security) (stored 0%) adding: extdata/vignette_archive/systemPipeR.pdf (332 bytes security) (deflated 8%) adding: extdata/vignette_archive/systemPipeR.R (332 bytes security) (deflated 74%) adding: extdata/vignette_archive/systemPipeR.Rnw (332 bytes security) (deflated 68%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 78%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: help/systemPipeR.rdb (332 bytes security) (deflated 1%) adding: help/systemPipeR.rdx (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 87%) adding: html/alignStats.html (332 bytes security) (deflated 52%) adding: html/catDB-class.html (332 bytes security) (deflated 59%) adding: html/catmap.html (332 bytes security) (deflated 47%) adding: html/clusterRun.html (332 bytes security) (deflated 59%) adding: html/countRangeset.html (332 bytes security) (deflated 57%) adding: html/featureCoverage.html (332 bytes security) (deflated 68%) adding: html/featuretypeCounts.html (332 bytes security) (deflated 63%) adding: html/filterDEGs.html (332 bytes security) (deflated 58%) adding: html/filterVars.html (332 bytes security) (deflated 70%) adding: html/genFeatures.html (332 bytes security) (deflated 61%) adding: html/getQsubargs.html (332 bytes security) (deflated 58%) adding: html/GOHyperGAll.html (332 bytes security) (deflated 66%) adding: html/INTERSECTset-class.html (332 bytes security) (deflated 68%) adding: html/mergeBamByFactor.html (332 bytes security) (deflated 60%) adding: html/moduleload.html (332 bytes security) (deflated 52%) adding: html/olBarplot.html (332 bytes security) (deflated 63%) adding: html/overLapper.html (332 bytes security) (deflated 66%) adding: html/plotfeatureCoverage.html (332 bytes security) (deflated 66%) adding: html/plotfeaturetypeCounts.html (332 bytes security) (deflated 63%) adding: html/predORF.html (332 bytes security) (deflated 62%) adding: html/preprocessReads.html (332 bytes security) (deflated 62%) adding: html/qsubRun.html (332 bytes security) (deflated 59%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/readComp.html (332 bytes security) (deflated 59%) adding: html/returnRPKM.html (332 bytes security) (deflated 48%) adding: html/runCommandline.html (332 bytes security) (deflated 54%) adding: html/runDiff.html (332 bytes security) (deflated 61%) adding: html/run_DESeq2.html (332 bytes security) (deflated 57%) adding: html/run_edgeR.html (332 bytes security) (deflated 58%) adding: html/scaleRanges.html (332 bytes security) (deflated 57%) adding: html/seeFastq.html (332 bytes security) (deflated 57%) adding: html/symLink2bam.html (332 bytes security) (deflated 57%) adding: html/SYSargs-class.html (332 bytes security) (deflated 71%) adding: html/sysargs.html (332 bytes security) (deflated 50%) adding: html/systemArgs.html (332 bytes security) (deflated 56%) adding: html/variantReport.html (332 bytes security) (deflated 69%) adding: html/vennPlot.html (332 bytes security) (deflated 66%) adding: html/VENNset-class.html (332 bytes security) (deflated 67%) adding: html/writeTargetsout.html (332 bytes security) (deflated 57%) adding: html/writeTargetsRef.html (332 bytes security) (deflated 58%) adding: INDEX (332 bytes security) (deflated 60%) adding: MD5 (332 bytes security) (deflated 51%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 50%) adding: NEWS (332 bytes security) (deflated 54%) adding: R/ (372 bytes security) (stored 0%) adding: R/systemPipeR (332 bytes security) (deflated 41%) adding: R/systemPipeR.rdb (332 bytes security) (deflated 11%) adding: R/systemPipeR.rdx (332 bytes security) (deflated 1%) adding: unitTests/ (372 bytes security) (stored 0%) adding: unitTests/SRR446027_1.fastq (332 bytes security) (stored 0%) adding: unitTests/SRR446028_1.fastq (332 bytes security) (stored 0%) adding: unitTests/SRR446029_1.fastq (332 bytes security) (stored 0%) adding: unitTests/SRR446030_1.fastq (332 bytes security) (stored 0%) adding: unitTests/targets.txt (332 bytes security) (deflated 39%) adding: unitTests/test_classes.R (332 bytes security) (deflated 32%) adding: unitTests/tophat.param (332 bytes security) (deflated 42%)