Back to Multiple platform build/check report for BioC 3.6
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

CHECK report for sscu on veracruz1

This page was generated on 2018-04-12 13:42:38 -0400 (Thu, 12 Apr 2018).

Package 1348/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sscu 2.8.0
Yu Sun
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/sscu
Branch: RELEASE_3_6
Last Commit: 938eee6
Last Changed Date: 2017-10-30 12:41:15 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK [ WARNINGS ] OK UNNEEDED, same version exists in internal repository

Summary

Package: sscu
Version: 2.8.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings sscu_2.8.0.tar.gz
StartedAt: 2018-04-12 09:59:36 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 10:01:20 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 104.5 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: sscu.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings sscu_2.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/sscu.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘sscu/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sscu’ version ‘2.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sscu’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
  ‘sscu.Rmd’
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
op_corre_NCprime 12.883  0.056  13.151
op_corre_CodonW  12.610  0.104  13.011
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  ‘/Users/biocbuild/bbs-3.6-bioc/meat/sscu.Rcheck/00check.log’
for details.



Installation output

sscu.Rcheck/00install.out

* installing *source* package ‘sscu’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (sscu)

Tests output


Example timings

sscu.Rcheck/sscu-Ex.timings

nameusersystemelapsed
akashi_test0.0170.0010.019
genomic_gc30.5660.0180.597
low_frequency_op1.2000.0521.284
op_corre_CodonW12.610 0.10413.011
op_corre_NCprime12.883 0.05613.151
op_highly0.9010.0210.935
op_highly_stats0.8490.0230.887
s_index0.4030.0170.427