Package: simulatorZ

Version: 1.12.0

Command: rm -rf simulatorZ.buildbin-libdir && mkdir simulatorZ.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh simulatorZ_1.12.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R simulatorZ.buildbin-libdir

StartedAt: 2018-04-12 12:16:07 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 12:16:20 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 12.7 seconds

RetCode: 0

Status:  OK

PackageFile: simulatorZ_1.12.0.tgz

PackageFileSize: 283.5 KiB

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf simulatorZ.buildbin-libdir && mkdir simulatorZ.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh simulatorZ_1.12.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R simulatorZ.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=simulatorZ.buildbin-libdir simulatorZ_1.12.0.tar.gz'
>>>>>>> 

* installing *source* package ‘simulatorZ’ ...
** libs
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxformatrices.cpp -o coxformatrices.o
coxformatrices.cpp:79:17: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                NULL
                ^˜˜˜
                {   }
/usr/local/clang4/bin/../lib/clang/4.0.0/include/stddef.h:100:18: note: expanded from macro 'NULL'
#    define NULL __null
                 ^˜˜˜˜˜
1 warning generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o simulatorZ.so coxformatrices.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/simulatorZ.buildbin-libdir/simulatorZ/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (simulatorZ)


>>>>>>> 
>>>>>>> FIXING LINKS FOR simulatorZ.buildbin-libdir/simulatorZ/libs//simulatorZ.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "simulatorZ.buildbin-libdir/simulatorZ/libs//simulatorZ.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "simulatorZ.buildbin-libdir/simulatorZ/libs//simulatorZ.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "simulatorZ.buildbin-libdir/simulatorZ/libs//simulatorZ.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "simulatorZ.buildbin-libdir/simulatorZ/libs//simulatorZ.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "simulatorZ.buildbin-libdir/simulatorZ/libs//simulatorZ.so"