Package: similaRpeak

Version: 1.10.0

Command: rm -rf similaRpeak.buildbin-libdir similaRpeak.Rcheck && mkdir similaRpeak.buildbin-libdir similaRpeak.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=similaRpeak.buildbin-libdir similaRpeak_1.10.0.tar.gz >similaRpeak.Rcheck\00install.out 2>&1 && cp similaRpeak.Rcheck\00install.out similaRpeak-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=similaRpeak.buildbin-libdir --install="check:similaRpeak-install.out" --force-multiarch --no-vignettes --timings similaRpeak_1.10.0.tar.gz

StartedAt: 2018-04-12 03:13:51 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 03:14:31 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 39.8 seconds

RetCode: 0

Status:  OK

CheckDir: similaRpeak.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf similaRpeak.buildbin-libdir similaRpeak.Rcheck && mkdir similaRpeak.buildbin-libdir similaRpeak.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=similaRpeak.buildbin-libdir similaRpeak_1.10.0.tar.gz >similaRpeak.Rcheck\00install.out 2>&1 && cp similaRpeak.Rcheck\00install.out similaRpeak-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=similaRpeak.buildbin-libdir --install="check:similaRpeak-install.out" --force-multiarch --no-vignettes --timings similaRpeak_1.10.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/similaRpeak.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'similaRpeak/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'similaRpeak' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'similaRpeak' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'similaRpeak' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'similaRpeak'
    finding HTML links ... done
    DiffPosMax                              html  
    Metric                                  html  
    MetricFactory                           html  
    RatioArea                               html  
    RatioIntersect                          html  
    RatioMaxMax                             html  
    RatioNormalizedIntersect                html  
    SpearmanCorrelation                     html  
    chr7Profiles                            html  
    demoProfiles                            html  
    diffPosMaxMethod                        html  
    ratioAreaMethod                         html  
    ratioIntersectMethod                    html  
    ratioMaxMaxMethod                       html  
    similaRpeak-package                     html  
    similarity                              html  
    spearmanCorrMethod                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'similaRpeak' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'similaRpeak' as similaRpeak_1.10.0.zip
* DONE (similaRpeak)
In R CMD INSTALL
In R CMD INSTALL

R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> ## Run all tests in the similaRpeak package
> BiocGenerics:::testPackage("similaRpeak")
Metric type: NA. Metric value: NA


RUNIT TEST PROTOCOL -- Thu Apr 12 03:14:19 2018 
*********************************************** 
Number of test functions: 84 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
similaRpeak RUnit Tests - 84 test functions, 0 errors, 0 failures
Number of test functions: 84 
Number of errors: 0 
Number of failures: 0 
Warning messages:
1: In max(profile1, na.rm = TRUE) :
  no non-missing arguments to max; returning -Inf
2: In max(profile2, na.rm = TRUE) :
  no non-missing arguments to max; returning -Inf
> 
> 
> proc.time()
   user  system elapsed 
   4.09    0.01    4.10 

R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> ## Run all tests in the similaRpeak package
> BiocGenerics:::testPackage("similaRpeak")
Metric type: NA. Metric value: NA


RUNIT TEST PROTOCOL -- Thu Apr 12 03:14:25 2018 
*********************************************** 
Number of test functions: 84 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
similaRpeak RUnit Tests - 84 test functions, 0 errors, 0 failures
Number of test functions: 84 
Number of errors: 0 
Number of failures: 0 
Warning messages:
1: In max(profile1, na.rm = TRUE) :
  no non-missing arguments to max; returning -Inf
2: In max(profile2, na.rm = TRUE) :
  no non-missing arguments to max; returning -Inf
> 
> 
> proc.time()
   user  system elapsed 
   6.06    0.07    6.12