Package: sagenhaft

Version: 1.48.0

Command: rm -rf sagenhaft.buildbin-libdir sagenhaft.Rcheck && mkdir sagenhaft.buildbin-libdir sagenhaft.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=sagenhaft.buildbin-libdir sagenhaft_1.48.0.tar.gz >sagenhaft.Rcheck\00install.out 2>&1 && cp sagenhaft.Rcheck\00install.out sagenhaft-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=sagenhaft.buildbin-libdir --install="check:sagenhaft-install.out" --force-multiarch --no-vignettes --timings sagenhaft_1.48.0.tar.gz

StartedAt: 2018-04-12 02:57:42 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 03:00:14 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 152.0 seconds

RetCode: 0

Status:  OK

CheckDir: sagenhaft.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf sagenhaft.buildbin-libdir sagenhaft.Rcheck && mkdir sagenhaft.buildbin-libdir sagenhaft.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=sagenhaft.buildbin-libdir sagenhaft_1.48.0.tar.gz >sagenhaft.Rcheck\00install.out 2>&1 && cp sagenhaft.Rcheck\00install.out sagenhaft-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=sagenhaft.buildbin-libdir --install="check:sagenhaft-install.out" --force-multiarch --no-vignettes --timings sagenhaft_1.48.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/sagenhaft.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'sagenhaft/DESCRIPTION' ... OK
* this is package 'sagenhaft' version '1.48.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'sagenhaft' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.2Mb
  sub-directories of 1Mb or more:
    extdata   7.0Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  'methods' 'SparseM'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
sage.test: warning in dbinom(0:isize, p = (prob[i])[1], size = isize):
  partial argument match of 'p' to 'prob'
extract.lib.from.zip: no visible global function definition for
  'zip.unpack'
Undefined global functions or variables:
  zip.unpack
Consider adding
  importFrom("utils", "zip.unpack")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
error.correction     43.19   0.61   43.82
sagelibrary.simulate  9.45   0.25    9.70
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
error.correction     42.11   0.80   43.20
sagelibrary.simulate 11.06   0.16   11.22
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/sagenhaft.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'sagenhaft' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'sagenhaft'
    finding HTML links ... done
    error.correction                        html  
    extract.lib                             html  
    sage.library                            html  
    sage.library.comparison                 html  
    sage.test                               html  
    sage.utilities                          html  
    sagelibrary.simulate                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'sagenhaft' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sagenhaft' as sagenhaft_1.48.0.zip
* DONE (sagenhaft)
In R CMD INSTALL
In R CMD INSTALL