Package: qpgraph

Version: 2.12.0

Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD INSTALL qpgraph

StartedAt: 2018-04-11 18:07:36 -0400 (Wed, 11 Apr 2018)

EndedAt: 2018-04-11 18:08:01 -0400 (Wed, 11 Apr 2018)

EllapsedTime: 24.5 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD INSTALL qpgraph
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* installing to library ‘/home/biocbuild/bbs-3.6-bioc/R/library’
* installing *source* package ‘qpgraph’ ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I/usr/local/include  -I/usr/local/include  -g -O2 -Wall -Wall -pedantic -fpic  -g -O2  -Wall -c cliquer.c -o cliquer.o
gcc -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I/usr/local/include  -I/usr/local/include  -g -O2 -Wall -Wall -pedantic -fpic  -g -O2  -Wall -c graph.c -o graph.o
gcc -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I/usr/local/include  -I/usr/local/include  -g -O2 -Wall -Wall -pedantic -fpic  -g -O2  -Wall -c qpgraph.c -o qpgraph.o
qpgraph.c: In function ‘qp_fast_path_weight’:
qpgraph.c:5849:20: warning: left-hand operand of comma expression has no effect [-Wunused-value]
     int i = edges[k, 0];
                    ^
qpgraph.c:5850:20: warning: left-hand operand of comma expression has no effect [-Wunused-value]
     int j = edges[k, 1];
                    ^
qpgraph.c: In function ‘ssd_A’:
qpgraph.c:8157:17: warning: unused variable ‘m’ [-Wunused-variable]
   int     i,j,k,m;
                 ^
qpgraph.c:8157:15: warning: unused variable ‘k’ [-Wunused-variable]
   int     i,j,k,m;
               ^
qpgraph.c: In function ‘qp_fast_rnd_graph’:
qpgraph.c:8286:5: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types]
   G = LOGICAL(GR);
     ^
In file included from qpgraph.c:27:0:
qpgraph.c: In function ‘qp_edge_nrr’:
/home/biocbuild/bbs-3.6-bioc/R/include/Rmath.h:302:13: warning: ‘Rf_df’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 #define pt  Rf_pt
             ^
/home/biocbuild/bbs-3.6-bioc/R/include/Rmath.h:236:13: note: ‘Rf_df’ was declared here
 #define df  Rf_df
             ^
qpgraph.c:5082:16: note: in expansion of macro ‘df’
   int    k, l, df, n_upper_tri;
                ^
qpgraph.c: In function ‘qp_fast_edge_nrr’:
qpgraph.c:5534:12: warning: ‘pcorR’ may be used uninitialized in this function [-Wmaybe-uninitialized]
     return pcorR;
            ^
qpgraph.c: In function ‘qp_ci_test_hmgm.isra.9’:
qpgraph.c:3976:36: warning: ‘rss1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
       *partial_eta_squared = (rss1 - rss2) / rss0;
                                    ^
qpgraph.c:3703:11: note: ‘rss1’ was declared here
   double  rss1, rss2;
           ^
gcc -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I/usr/local/include  -I/usr/local/include  -g -O2 -Wall -Wall -pedantic -fpic  -g -O2  -Wall -c reorder.c -o reorder.o
g++ -shared -L/home/biocbuild/bbs-3.6-bioc/R/lib -L/usr/local/lib -o qpgraph.so cliquer.o graph.o qpgraph.o reorder.o -L/home/biocbuild/bbs-3.6-bioc/R/lib -lRblas -L/home/biocbuild/bbs-3.6-bioc/R/lib -lRlapack -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.6-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.6-bioc/R/library/qpgraph/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function for ‘det’ from package ‘Matrix’ in package ‘qpgraph’
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘eQTLnetworks.Rnw’ 
   ‘qpTxRegNet.Rnw’ 
   ‘qpgraphSimulate.Rnw’ 
** testing if installed package can be loaded
* DONE (qpgraph)