Henning Redestig
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/pcaMethods |
| Branch: RELEASE_3_6 |
| Last Commit: 3368fad |
| Last Changed Date: 2017-10-30 12:39:18 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:18:27 -0400 (Thu, 12 Apr 2018).
| Package 1016/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| pcaMethods 1.70.0 Henning Redestig
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: pcaMethods |
| Version: 1.70.0 |
| Command: rm -rf pcaMethods.buildbin-libdir && mkdir pcaMethods.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/pcaMethods_1.70.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=pcaMethods.buildbin-libdir --merge-multiarch pcaMethods_1.70.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL pcaMethods_1.70.0.zip && rm pcaMethods_1.70.0.tar.gz pcaMethods_1.70.0.zip |
| StartedAt: 2018-04-11 18:21:37 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:24:42 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 185.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf pcaMethods.buildbin-libdir && mkdir pcaMethods.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/pcaMethods_1.70.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=pcaMethods.buildbin-libdir --merge-multiarch pcaMethods_1.70.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL pcaMethods_1.70.0.zip && rm pcaMethods_1.70.0.tar.gz pcaMethods_1.70.0.zip
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install for i386
* installing *source* package 'pcaMethods' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c nipals.cpp -o nipals.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o pcaMethods.dll tmp.def RcppExports.o nipals.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/pcaMethods.buildbin-libdir/pcaMethods/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for 'loadings' in package 'pcaMethods'
** help
*** installing help indices
converting help for package 'pcaMethods'
finding HTML links ... done
BPCA_dostep html
BPCA_initmodel html
DModX-pcaRes-method html
Q2 html
R2VX-pcaRes-method html
R2cum-pcaRes-method html
RnipalsPca html
asExprSet html
biplot-methods html
bpca html
center-pcaRes-method html
centered-pcaRes-method html
checkData html
completeObs-nniRes-method html
cvseg html
cvstat-pcaRes-method html
deletediagonals html
derrorHierarchic html
dim.pcaRes html
errorHierarchic html
fitted-methods html
forkNlpcaNet html
getHierarchicIdx html
helix html
kEstimate html
kEstimateFast html
leverage-pcaRes-method html
lineSearch html
linr html
listPcaMethods html
llsImpute html
loadings-ANY-method html
loadings-pcaRes-method html
loadings.pcaRes html
metaboliteData html
metaboliteDataComplete html
method-pcaRes-method html
nObs-pcaRes-method html
nP-pcaRes-method html
nPcs-pcaRes-method html
nVar-pcaRes-method html
nipalsPca html
nlpca html
nmissing-pcaRes-method html
nni html
nniRes html
optiAlgCgd html
orth html
pca html
pcaMethods-deprecated html
pcaMethods html
pcaNet html
pcaRes html
plot.pcaRes html
plotPcs html
ppca html
predict-methods html
prep html
rediduals-methods html
repmat html
robustPca html
robustSvd html
sDev-pcaRes-method html
scaled-pcaRes-method html
scl-pcaRes-method html
scores-pcaRes-method html
scores.pcaRes html
show-methods html
showNniRes html
simpleEllipse html
slplot-pcaRes-method html
sortFeatures html
summary html
svdImpute html
svdPca html
tempFixNas html
vector2matrices-matrix-method html
vector2matrices-nlpcaNet-method html
wasna-pcaRes-method html
weightsAccount html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'pcaMethods' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c nipals.cpp -o nipals.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o pcaMethods.dll tmp.def RcppExports.o nipals.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/pcaMethods.buildbin-libdir/pcaMethods/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pcaMethods' as pcaMethods_1.70.0.zip
* DONE (pcaMethods)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'pcaMethods' successfully unpacked and MD5 sums checked
In R CMD INSTALL