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CHECK report for mogsa on veracruz1

This page was generated on 2018-04-12 13:40:43 -0400 (Thu, 12 Apr 2018).

Package 882/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mogsa 1.12.2
Chen Meng
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/mogsa
Branch: RELEASE_3_6
Last Commit: 2673da1
Last Changed Date: 2017-11-27 10:30:47 -0400 (Mon, 27 Nov 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository

Summary

Package: mogsa
Version: 1.12.2
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings mogsa_1.12.2.tar.gz
StartedAt: 2018-04-12 06:37:35 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 06:40:01 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 145.5 seconds
RetCode: 0
Status:  OK 
CheckDir: mogsa.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings mogsa_1.12.2.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/mogsa.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mogsa/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mogsa’ version ‘1.12.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mogsa’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

mogsa.Rcheck/00install.out

* installing *source* package ‘mogsa’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (mogsa)

Tests output


Example timings

mogsa.Rcheck/mogsa-Ex.timings

nameusersystemelapsed
GIS0.8480.0250.890
annotate.gs0.6000.0230.637
bootMbpca0.0000.0000.002
box.gs.feature0.2510.0140.273
combine-methods0.4160.0160.439
decompose.gs.group0.6430.0220.672
decompose.gs.ind0.1230.0160.143
distMoa0.5420.0230.577
getmgsa0.1070.0120.121
matpower0.0090.0000.009
mbpca3.1240.1363.318
mgsa-class0.4770.0140.499
moGap1.2490.0241.289
moa-class0.1200.0050.128
moa0.4050.0090.421
moa.sup-class0.1150.0100.129
moaCoef0.3520.0210.385
moaScore0.3370.0210.360
mogsa-package0.2170.0240.244
mogsa0.4670.0240.495
pairwise.rv0.0080.0010.009
plotGS0.1420.0100.155
prepGraphite0.3550.0160.373
prepMsigDB0.0050.0000.005
prepSupMoa4.2410.0704.357
softK0.0010.0000.001
sup.moa0.6510.0160.679
wsvd0.0020.0000.002