Package: microRNA

Version: 1.36.0

Command: rm -rf microRNA.buildbin-libdir && mkdir microRNA.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/microRNA_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=microRNA.buildbin-libdir --merge-multiarch microRNA_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL microRNA_1.36.0.zip && rm microRNA_1.36.0.tar.gz microRNA_1.36.0.zip

StartedAt: 2018-04-11 18:35:14 -0400 (Wed, 11 Apr 2018)

EndedAt: 2018-04-11 18:36:02 -0400 (Wed, 11 Apr 2018)

EllapsedTime: 48.0 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   rm -rf microRNA.buildbin-libdir && mkdir microRNA.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/microRNA_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=microRNA.buildbin-libdir --merge-multiarch microRNA_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL microRNA_1.36.0.zip  && rm microRNA_1.36.0.tar.gz microRNA_1.36.0.zip
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install for i386

* installing *source* package 'microRNA' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c longest_common_substring.cpp -o longest_common_substring.o
longest_common_substring.cpp: In function 'SEXPREC* longest_common_substring(SEXP)':
longest_common_substring.cpp:55:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if (i == len[index] - 1) { // ignore null termination character
               ^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o microRNA.dll tmp.def longest_common_substring.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/microRNA.buildbin-libdir/microRNA/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'microRNA'
    finding HTML links ... done
    RNA2DNA                                 html  
    get_selfhyb_subseq                      html  
    hsSeqs                                  html  
    hsTargets                               html  
    matchSeeds                              html  
    mmSeqs                                  html  
    mmTargets                               html  
    s3utr                                   html  
    seedRegions                             html  
** building package indices
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'microRNA' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c longest_common_substring.cpp -o longest_common_substring.o
longest_common_substring.cpp: In function 'SEXPREC* longest_common_substring(SEXP)':
longest_common_substring.cpp:55:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if (i == len[index] - 1) { // ignore null termination character
               ^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o microRNA.dll tmp.def longest_common_substring.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/microRNA.buildbin-libdir/microRNA/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'microRNA' as microRNA_1.36.0.zip
* DONE (microRNA)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'microRNA' successfully unpacked and MD5 sums checked
In R CMD INSTALL