Package: maSigPro

Version: 1.50.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings maSigPro_1.50.0.tar.gz

StartedAt: 2018-04-12 05:51:01 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 05:54:20 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 199.3 seconds

RetCode: 0

Status:  OK

CheckDir: maSigPro.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings maSigPro_1.50.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/maSigPro.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.50.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
tableDS       16.827  0.126  17.470
seeDS         16.292  0.119  16.913
ISOdata       15.377  0.125  15.896
IsoModel      15.147  0.147  15.708
getDS         14.893  0.118  15.325
ISOdesign     14.884  0.107  15.342
getDSPatterns 14.718  0.110  15.153
IsoPlot       14.656  0.088  15.059
PodiumChange  14.306  0.078  14.693
T.fit          6.894  0.020   7.044
maSigPro       5.036  0.024   5.267
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘maSigPro’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (maSigPro)

name	user	system	elapsed
ISOdata	15.377	0.125	15.896
ISOdesign	14.884	0.107	15.342
IsoModel	15.147	0.147	15.708
IsoPlot	14.656	0.088	15.059
NBdata	0.001	0.001	0.003
NBdesign	0.001	0.000	0.002
PlotGroups	0.035	0.001	0.043
PlotProfiles	0.009	0.002	0.015
PodiumChange	14.306	0.078	14.693
T.fit	6.894	0.020	7.044
average.rows	0.004	0.000	0.004
data.abiotic	0.003	0.001	0.004
edesign.abiotic	0.003	0.001	0.004
edesignCT	0.002	0.001	0.003
edesignDR	0.002	0.001	0.003
get.siggenes	2.805	0.010	2.851
getDS	14.893	0.118	15.325
getDSPatterns	14.718	0.110	15.153
i.rank	0.000	0.000	0.001
maSigPro	5.036	0.024	5.267
maSigProUsersGuide	0.004	0.002	0.007
make.design.matrix	0.011	0.006	0.018
p.vector	2.139	0.012	2.218
position	0.001	0.000	0.001
reg.coeffs	0.000	0.000	0.001
see.genes	0.817	0.093	1.073
seeDS	16.292	0.119	16.913
stepback	0.037	0.000	0.038
stepfor	0.140	0.001	0.144
suma2Venn	0.094	0.003	0.107
tableDS	16.827	0.126	17.470
two.ways.stepback	0.117	0.001	0.122
two.ways.stepfor	0.151	0.001	0.156