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INSTALL report for gwascat on tokay1

This page was generated on 2018-04-12 13:21:34 -0400 (Thu, 12 Apr 2018).

Package 634/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gwascat 2.10.0
VJ Carey
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/gwascat
Branch: RELEASE_3_6
Last Commit: d106e22
Last Changed Date: 2017-10-30 12:39:38 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: gwascat
Version: 2.10.0
Command: rm -rf gwascat.buildbin-libdir && mkdir gwascat.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/gwascat_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=gwascat.buildbin-libdir --merge-multiarch gwascat_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL gwascat_2.10.0.zip && rm gwascat_2.10.0.tar.gz gwascat_2.10.0.zip
StartedAt: 2018-04-11 18:59:43 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 19:00:46 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 63.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf gwascat.buildbin-libdir && mkdir gwascat.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/gwascat_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=gwascat.buildbin-libdir --merge-multiarch gwascat_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL gwascat_2.10.0.zip  && rm gwascat_2.10.0.tar.gz gwascat_2.10.0.zip
###
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100 37.0M  100 37.0M    0     0   100M      0 --:--:-- --:--:-- --:--:--  101M

install for i386

* installing *source* package 'gwascat' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'gwascat'
    finding HTML links ... done
    bindcadd_snv                            html  
    gwascat-package                         html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpEZGdoG/R.INSTALL194057f744ec/gwascat/man/gwascat-package.Rd:76: missing file link 'nodeData'
    gwastagger                              html  
    gwaswloc-class                          html  
    finding level-2 HTML links ... done

    gwcex2gviz                              html  
    gwdf_2012_02_02                         html  
    ldtagr                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpEZGdoG/R.INSTALL194057f744ec/gwascat/man/ldtagr.Rd:19: missing file link 'genotypeToSnpMatrix'
    locon6                                  html  
    makeCurrentGwascat                      html  
    obo2graphNEL                            html  
    riskyAlleleCount                        html  
    topTraits                               html  
    traitsManh                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'gwascat' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gwascat' as gwascat_2.10.0.zip
* DONE (gwascat)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'gwascat' successfully unpacked and MD5 sums checked
In R CMD INSTALL