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INSTALL report for gQTLstats on tokay1

This page was generated on 2018-04-12 13:25:29 -0400 (Thu, 12 Apr 2018).

Package 611/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gQTLstats 1.10.1
VJ Carey
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/gQTLstats
Branch: RELEASE_3_6
Last Commit: 070d681
Last Changed Date: 2017-12-03 13:09:47 -0400 (Sun, 03 Dec 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: gQTLstats
Version: 1.10.1
Command: rm -rf gQTLstats.buildbin-libdir && mkdir gQTLstats.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/gQTLstats_1.10.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=gQTLstats.buildbin-libdir --merge-multiarch gQTLstats_1.10.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL gQTLstats_1.10.1.zip && rm gQTLstats_1.10.1.tar.gz gQTLstats_1.10.1.zip
StartedAt: 2018-04-11 18:57:45 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:59:41 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 116.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf gQTLstats.buildbin-libdir && mkdir gQTLstats.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/gQTLstats_1.10.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=gQTLstats.buildbin-libdir --merge-multiarch gQTLstats_1.10.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL gQTLstats_1.10.1.zip  && rm gQTLstats_1.10.1.tar.gz gQTLstats_1.10.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 62.6M  100 62.6M    0     0  97.2M      0 --:--:-- --:--:-- --:--:-- 97.7M

install for i386

* installing *source* package 'gQTLstats' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'gQTLstats'
    finding HTML links ... done
    FDRsupp-class                           html  
    TransStore-class                        html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpas3BN6/R.INSTALL16907c26267b/gQTLstats/man/TransStore-class.Rd:19: missing file link 'Registry'
    TransStore                              html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpas3BN6/R.INSTALL16907c26267b/gQTLstats/man/TransStore.Rd:18: missing file link 'Registry'
    cisAssoc                                html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpas3BN6/R.INSTALL16907c26267b/gQTLstats/man/cisAssoc.Rd:37: missing file link 'RangedSummarizedExperiment'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpas3BN6/R.INSTALL16907c26267b/gQTLstats/man/cisAssoc.Rd:40: missing file link 'TabixFile'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpas3BN6/R.INSTALL16907c26267b/gQTLstats/man/cisAssoc.Rd:63: missing file link 'col.summary'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpas3BN6/R.INSTALL16907c26267b/gQTLstats/man/cisAssoc.Rd:75: missing file link 'isSNV'
    clipPCs                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpas3BN6/R.INSTALL16907c26267b/gQTLstats/man/clipPCs.Rd:24: missing file link 'RangedSummarizedExperiment'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpas3BN6/R.INSTALL16907c26267b/gQTLstats/man/clipPCs.Rd:50: missing file link 'RangedSummarizedExperiment'
    directPlot                              html  
    enumerateByFDR                          html  
    finding level-2 HTML links ... done

    eqBox2                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpas3BN6/R.INSTALL16907c26267b/gQTLstats/man/eqBox2.Rd:27: missing file link 'RangedSummarizedExperiment'
    filtFDR                                 html  
    gQTLs                                   html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpas3BN6/R.INSTALL16907c26267b/gQTLstats/man/gQTLs.Rd:29: missing file link 'readVcf'
    gQTLstats-package                       html  
    hmm878                                  html  
    manhWngr                                html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpas3BN6/R.INSTALL16907c26267b/gQTLstats/man/manhWngr.Rd:28: missing file link 'GRanges'
    mixedVCFtoSnpMatrix                     html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpas3BN6/R.INSTALL16907c26267b/gQTLstats/man/mixedVCFtoSnpMatrix.Rd:18: missing file link 'CollapsedVCF-class'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpas3BN6/R.INSTALL16907c26267b/gQTLstats/man/mixedVCFtoSnpMatrix.Rd:24: missing file link 'genotypeToSnpMatrix'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpas3BN6/R.INSTALL16907c26267b/gQTLstats/man/mixedVCFtoSnpMatrix.Rd:32: missing file link 'genotypeToSnpMatrix'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpas3BN6/R.INSTALL16907c26267b/gQTLstats/man/mixedVCFtoSnpMatrix.Rd:50: missing file link 'genotypeToSnpMatrix'
    pifdr                                   html  
    qqStore                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpas3BN6/R.INSTALL16907c26267b/gQTLstats/man/qqStore.Rd:28: missing file link 'storeToQuantiles'
    queryVCF                                html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpas3BN6/R.INSTALL16907c26267b/gQTLstats/man/queryVCF.Rd:29: missing file link 'genotypeToSnpMatrix'
    senstab                                 html  
    setFDRfunc                              html  
    storeToStats                            html  
    tqbrowser                               html  
    transAssoc                              html  
    transBrowse                             html  
    tsByRank                                html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpas3BN6/R.INSTALL16907c26267b/gQTLstats/man/tsByRank.Rd:52: missing file link 'GRanges'
    txsPlot                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'gQTLstats' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gQTLstats' as gQTLstats_1.10.1.zip
* DONE (gQTLstats)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'gQTLstats' successfully unpacked and MD5 sums checked
In R CMD INSTALL