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INSTALL report for flowType on tokay1

This page was generated on 2018-04-12 13:20:57 -0400 (Thu, 12 Apr 2018).

Package 496/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowType 2.16.0
Nima Aghaeepour
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/flowType
Branch: RELEASE_3_6
Last Commit: b406710
Last Changed Date: 2017-10-30 12:39:34 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: flowType
Version: 2.16.0
Command: rm -rf flowType.buildbin-libdir && mkdir flowType.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/flowType_2.16.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=flowType.buildbin-libdir --merge-multiarch flowType_2.16.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL flowType_2.16.0.zip && rm flowType_2.16.0.tar.gz flowType_2.16.0.zip
StartedAt: 2018-04-11 18:44:59 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:46:12 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 72.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf flowType.buildbin-libdir && mkdir flowType.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/flowType_2.16.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=flowType.buildbin-libdir --merge-multiarch flowType_2.16.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL flowType_2.16.0.zip  && rm flowType_2.16.0.tar.gz flowType_2.16.0.zip
###
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install for i386

* installing *source* package 'flowType' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include"   -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c countsAndMeans.cpp -o countsAndMeans.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include"   -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c flowType.cpp -o flowType.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include"   -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c numberGenerator.cpp -o numberGenerator.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o flowType.dll tmp.def countsAndMeans.o flowType.o numberGenerator.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/flowType.buildbin-libdir/flowType/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'flowType'
    finding HTML links ... done
    DLBCLExample                            html  
    HIVData                                 html  
    HIVMetaData                             html  
    Phenotypes                              html  
    calcMemUse                              html  
    calcNumPops                             html  
    decodePhenotype-methods                 html  
    encodePhenotype                         html  
    flowType-package                        html  
    flowType                                html  
    getLabels                               html  
    plot                                    html  
    summary-methods                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'flowType' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include"   -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c countsAndMeans.cpp -o countsAndMeans.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include"   -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c flowType.cpp -o flowType.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include"   -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c numberGenerator.cpp -o numberGenerator.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o flowType.dll tmp.def countsAndMeans.o flowType.o numberGenerator.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/flowType.buildbin-libdir/flowType/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowType' as flowType_2.16.0.zip
* DONE (flowType)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'flowType' successfully unpacked and MD5 sums checked
In R CMD INSTALL