Alexey Sergushichev
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/fgsea |
| Branch: RELEASE_3_6 |
| Last Commit: 73de5ff |
| Last Changed Date: 2018-01-19 08:07:52 -0400 (Fri, 19 Jan 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:28:20 -0400 (Thu, 12 Apr 2018).
| Package 463/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| fgsea 1.4.1 Alexey Sergushichev
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: fgsea |
| Version: 1.4.1 |
| Command: rm -rf fgsea.buildbin-libdir && mkdir fgsea.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/fgsea_1.4.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=fgsea.buildbin-libdir --merge-multiarch fgsea_1.4.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL fgsea_1.4.1.zip && rm fgsea_1.4.1.tar.gz fgsea_1.4.1.zip |
| StartedAt: 2018-04-11 18:24:27 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:25:55 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 87.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf fgsea.buildbin-libdir && mkdir fgsea.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/fgsea_1.4.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=fgsea.buildbin-libdir --merge-multiarch fgsea_1.4.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL fgsea_1.4.1.zip && rm fgsea_1.4.1.tar.gz fgsea_1.4.1.zip
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install for i386
* installing *source* package 'fgsea' ...
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c fastGSEA.cpp -o fastGSEA.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c fgsea_init.c -o fgsea_init.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o fgsea.dll tmp.def RcppExports.o fastGSEA.o fgsea_init.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/fgsea.buildbin-libdir/fgsea/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'fgsea'
finding HTML links ... done
calcGseaStat html
examplePathways html
exampleRanks html
fgsea html
gmtPathways html
plotEnrichment html
plotGseaTable html
reactomePathways html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'fgsea' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c fastGSEA.cpp -o fastGSEA.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c fgsea_init.c -o fgsea_init.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o fgsea.dll tmp.def RcppExports.o fastGSEA.o fgsea_init.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/fgsea.buildbin-libdir/fgsea/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'fgsea' as fgsea_1.4.1.zip
* DONE (fgsea)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'fgsea' successfully unpacked and MD5 sums checked
In R CMD INSTALL