Hector Corrada Bravo
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/epivizr |
| Branch: RELEASE_3_6 |
| Last Commit: 6535bb0 |
| Last Changed Date: 2017-10-30 12:40:08 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:23:25 -0400 (Thu, 12 Apr 2018).
| Package 430/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| epivizr 2.8.0 Hector Corrada Bravo
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: epivizr |
| Version: 2.8.0 |
| Command: rm -rf epivizr.buildbin-libdir && mkdir epivizr.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/epivizr_2.8.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=epivizr.buildbin-libdir --merge-multiarch epivizr_2.8.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL epivizr_2.8.0.zip && rm epivizr_2.8.0.tar.gz epivizr_2.8.0.zip |
| StartedAt: 2018-04-11 18:51:48 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:52:45 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 57.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf epivizr.buildbin-libdir && mkdir epivizr.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/epivizr_2.8.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=epivizr.buildbin-libdir --merge-multiarch epivizr_2.8.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL epivizr_2.8.0.zip && rm epivizr_2.8.0.tar.gz epivizr_2.8.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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install for i386
* installing *source* package 'epivizr' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'epivizr'
finding HTML links ... done
EpivizApp-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi4ABZh/R.INSTALL8b81da9605e/epivizr/man/EpivizApp-class.Rd:14: missing file link 'EpivizServer'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi4ABZh/R.INSTALL8b81da9605e/epivizr/man/EpivizApp-class.Rd:16: missing file link 'EpivizDataMgr'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi4ABZh/R.INSTALL8b81da9605e/epivizr/man/EpivizApp-class.Rd:33: missing file link 'EpivizData'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi4ABZh/R.INSTALL8b81da9605e/epivizr/man/EpivizApp-class.Rd:57: missing file link 'EpivizData'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi4ABZh/R.INSTALL8b81da9605e/epivizr/man/EpivizApp-class.Rd:58: missing file link 'EpivizData'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi4ABZh/R.INSTALL8b81da9605e/epivizr/man/EpivizApp-class.Rd:67: missing file link 'EpivizData'
EpivizChart-class html
EpivizChartMgr-class html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi4ABZh/R.INSTALL8b81da9605e/epivizr/man/EpivizChartMgr-class.Rd:33: missing file link 'EpivizServer'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi4ABZh/R.INSTALL8b81da9605e/epivizr/man/EpivizChartMgr-class.Rd:55: missing file link 'EpivizData'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi4ABZh/R.INSTALL8b81da9605e/epivizr/man/EpivizChartMgr-class.Rd:56: missing file link 'EpivizData'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi4ABZh/R.INSTALL8b81da9605e/epivizr/man/EpivizChartMgr-class.Rd:60: missing file link 'EpivizData'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi4ABZh/R.INSTALL8b81da9605e/epivizr/man/EpivizChartMgr-class.Rd:121: missing file link 'EpivizData'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi4ABZh/R.INSTALL8b81da9605e/epivizr/man/EpivizChartMgr-class.Rd:126: missing file link 'EpivizMeasurement'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi4ABZh/R.INSTALL8b81da9605e/epivizr/man/EpivizChartMgr-class.Rd:128: missing file link 'EpivizData'
restartEpiviz html
show-EpivizChart-method html
startEpiviz html
tcga_colon_blocks html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi4ABZh/R.INSTALL8b81da9605e/epivizr/man/tcga_colon_blocks.Rd:7: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi4ABZh/R.INSTALL8b81da9605e/epivizr/man/tcga_colon_blocks.Rd:29: missing file link 'GRanges'
tcga_colon_curves html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi4ABZh/R.INSTALL8b81da9605e/epivizr/man/tcga_colon_curves.Rd:7: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi4ABZh/R.INSTALL8b81da9605e/epivizr/man/tcga_colon_curves.Rd:25: missing file link 'GRanges'
tcga_colon_expression html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi4ABZh/R.INSTALL8b81da9605e/epivizr/man/tcga_colon_expression.Rd:23: missing file link 'RangedSummarizedExperiment'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi4ABZh/R.INSTALL8b81da9605e/epivizr/man/tcga_colon_expression.Rd:7: missing file link 'RangedSummarizedExperiment'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi4ABZh/R.INSTALL8b81da9605e/epivizr/man/tcga_colon_expression.Rd:20: missing file link 'RangedSummarizedExperiment'
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'epivizr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'epivizr' as epivizr_2.8.0.zip
* DONE (epivizr)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'epivizr' successfully unpacked and MD5 sums checked
In R CMD INSTALL