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INSTALL report for easyRNASeq on tokay1

This page was generated on 2018-04-12 13:21:29 -0400 (Thu, 12 Apr 2018).

Package 399/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
easyRNASeq 2.14.0
Nicolas Delhomme
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/easyRNASeq
Branch: RELEASE_3_6
Last Commit: 8212b25
Last Changed Date: 2017-10-30 12:39:37 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: easyRNASeq
Version: 2.14.0
Command: rm -rf easyRNASeq.buildbin-libdir && mkdir easyRNASeq.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/easyRNASeq_2.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=easyRNASeq.buildbin-libdir --merge-multiarch easyRNASeq_2.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL easyRNASeq_2.14.0.zip && rm easyRNASeq_2.14.0.tar.gz easyRNASeq_2.14.0.zip
StartedAt: 2018-04-11 18:47:39 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:49:12 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 92.9 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   rm -rf easyRNASeq.buildbin-libdir && mkdir easyRNASeq.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/easyRNASeq_2.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=easyRNASeq.buildbin-libdir --merge-multiarch easyRNASeq_2.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL easyRNASeq_2.14.0.zip  && rm easyRNASeq_2.14.0.tar.gz easyRNASeq_2.14.0.zip
###
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100  241k  100  241k    0     0  6288k      0 --:--:-- --:--:-- --:--:-- 6907k

install for i386

* installing *source* package 'easyRNASeq' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'basename' from package 'base' in package 'easyRNASeq'
Creating a generic function for 'file.exists' from package 'base' in package 'easyRNASeq'
** help
*** installing help indices
  converting help for package 'easyRNASeq'
    finding HTML links ... done
    DESeq-methods                           html  
    finding level-2 HTML links ... done

    GenomicRanges-methods                   html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqwcfGE/R.INSTALL104436be6bde/easyRNASeq/man/GenomicRanges-methods.Rd:20: missing file link 'colnames'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqwcfGE/R.INSTALL104436be6bde/easyRNASeq/man/GenomicRanges-methods.Rd:22: missing file link 'colnames'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqwcfGE/R.INSTALL104436be6bde/easyRNASeq/man/GenomicRanges-methods.Rd:99: missing file link 'colnames'
    IRanges-methods                         html  
    Rsamtools-methods                       html  
    ShortRead-methods                       html  
    basename-methods                        html  
    easyRNASeq-AnnotParam-accessors         html  
    easyRNASeq-AnnotParam-class             html  
    easyRNASeq-AnnotParam                   html  
    easyRNASeq-BamFileList                  html  
    easyRNASeq-BamParam-accessors           html  
    easyRNASeq-BamParam-class               html  
    easyRNASeq-BamParam                     html  
    easyRNASeq-RnaSeqParam-accessors        html  
    easyRNASeq-RnaSeqParam-class            html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqwcfGE/R.INSTALL104436be6bde/easyRNASeq/man/easyRNASeq-RnaSeqParam-class.Rd:14: missing file link 'summarizeOverlaps'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqwcfGE/R.INSTALL104436be6bde/easyRNASeq/man/easyRNASeq-RnaSeqParam-class.Rd:39: missing file link 'summarizeOverlaps'
    easyRNASeq-RnaSeqParam                  html  
    easyRNASeq-accessors                    html  
    easyRNASeq-annotation-internal-methods
                                            html  
    easyRNASeq-annotation-methods           html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqwcfGE/R.INSTALL104436be6bde/easyRNASeq/man/easyRNASeq-annotation-methods.Rd:38: missing file link 'readGff3'
    easyRNASeq-class                        html  
    easyRNASeq-correction-methods           html  
    easyRNASeq-coverage-methods             html  
    easyRNASeq-datasets                     html  
    easyRNASeq-defunct-annotation-methods   html  
    easyRNASeq-defunct                      html  
    easyRNASeq-deprecated                   html  
    easyRNASeq-easyRNASeq                   html  
    easyRNASeq-global-variables             html  
    easyRNASeq-internal-AnnotParam-methods
                                            html  
    easyRNASeq-internal-methods             html  
    easyRNASeq-island-methods               html  
    easyRNASeq-package                      html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqwcfGE/R.INSTALL104436be6bde/easyRNASeq/man/easyRNASeq-package.Rd:129: missing file link 'BamFileList'
    easyRNASeq-simpleRNASeq                 html  
    easyRNASeq-summarization-internal-methods
                                            html  
    easyRNASeq-summarization-methods        html  
    easyRNASeq-synthetic-transcripts        html  
    edgeR-methods                           html  
    file.exists-methods                     html  
    genomeIntervals-methods                 html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqwcfGE/R.INSTALL104436be6bde/easyRNASeq/man/genomeIntervals-methods.Rd:39: missing file link 'readGff3'
    parallel-methods                        html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqwcfGE/R.INSTALL104436be6bde/easyRNASeq/man/parallel-methods.Rd:44: missing file link 'makePSOCKcluster'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpqwcfGE/R.INSTALL104436be6bde/easyRNASeq/man/parallel-methods.Rd:45: missing file link 'stopCluster'
    print-methods                           html  
    show-methods                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'easyRNASeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'easyRNASeq' as easyRNASeq_2.14.0.zip
* DONE (easyRNASeq)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'easyRNASeq' successfully unpacked and MD5 sums checked
In R CMD INSTALL