Benjamin Callahan
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/dada2 |
| Branch: RELEASE_3_6 |
| Last Commit: 553008d |
| Last Changed Date: 2017-10-30 12:41:13 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:27:34 -0400 (Thu, 12 Apr 2018).
| Package 326/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| dada2 1.6.0 Benjamin Callahan
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: dada2 |
| Version: 1.6.0 |
| Command: cd dada2.buildbin-libdir/dada2 && zip -r ../../dada2_1.6.0.zip . & cd ../.. |
| StartedAt: 2018-04-12 04:33:28 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 04:34:08 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 40.8 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: dada2_1.6.0.zip |
| PackageFileSize: 4.553 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd dada2.buildbin-libdir/dada2 && zip -r ../../dada2_1.6.0.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: CITATION (332 bytes security) (deflated 23%) adding: data/ (372 bytes security) (stored 0%) adding: data/Rdata.rdb (332 bytes security) (deflated 0%) adding: data/Rdata.rds (332 bytes security) (stored 0%) adding: data/Rdata.rdx (332 bytes security) (stored 0%) adding: DESCRIPTION (332 bytes security) (deflated 46%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/dada2-intro.html (332 bytes security) (deflated 58%) adding: doc/dada2-intro.R (332 bytes security) (deflated 73%) adding: doc/dada2-intro.Rmd (332 bytes security) (deflated 61%) adding: doc/index.html (332 bytes security) (deflated 58%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/example_seqs.fa (332 bytes security) (deflated 64%) adding: extdata/example_species_assignment.fa.gz (332 bytes security) (deflated 2%) adding: extdata/example_train_set.fa.gz (332 bytes security) (stored 0%) adding: extdata/phix_genome.fa (332 bytes security) (deflated 67%) adding: extdata/sam1F.fastq.gz (332 bytes security) (deflated 0%) adding: extdata/sam1R.fastq.gz (332 bytes security) (deflated 0%) adding: extdata/sam2F.fastq.gz (332 bytes security) (deflated 0%) adding: extdata/sam2R.fastq.gz (332 bytes security) (deflated 0%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 67%) adding: help/dada2.rdb (332 bytes security) (deflated 2%) adding: help/dada2.rdx (332 bytes security) (stored 0%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 75%) adding: html/addSpecies.html (332 bytes security) (deflated 60%) adding: html/assignSpecies.html (332 bytes security) (deflated 57%) adding: html/assignTaxonomy.html (332 bytes security) (deflated 61%) adding: html/c-dada-method.html (332 bytes security) (deflated 50%) adding: html/c-derep-method.html (332 bytes security) (deflated 50%) adding: html/collapseNoMismatch.html (332 bytes security) (deflated 58%) adding: html/dada-class.html (332 bytes security) (deflated 55%) adding: html/dada.html (332 bytes security) (deflated 62%) adding: html/dada2-package.html (332 bytes security) (deflated 59%) adding: html/dada_to_seq_table.html (332 bytes security) (deflated 65%) adding: html/derep-class.html (332 bytes security) (deflated 49%) adding: html/derepFasta.html (332 bytes security) (deflated 54%) adding: html/derepFastq.html (332 bytes security) (deflated 55%) adding: html/errBalancedF.html (332 bytes security) (deflated 41%) adding: html/errBalancedR.html (332 bytes security) (deflated 41%) adding: html/errExtremeF.html (332 bytes security) (deflated 41%) adding: html/errExtremeR.html (332 bytes security) (deflated 41%) adding: html/errHmpF.html (332 bytes security) (deflated 40%) adding: html/errHmpR.html (332 bytes security) (deflated 40%) adding: html/evaluate_kmers.html (332 bytes security) (deflated 58%) adding: html/fastqFilter.html (332 bytes security) (deflated 66%) adding: html/fastqPairedFilter.html (332 bytes security) (deflated 67%) adding: html/filterAndTrim.html (332 bytes security) (deflated 68%) adding: html/getDadaOpt.html (332 bytes security) (deflated 48%) adding: html/getErrors.html (332 bytes security) (deflated 54%) adding: html/getSequences.html (332 bytes security) (deflated 54%) adding: html/getUniques.html (332 bytes security) (deflated 56%) adding: html/inflateErr.html (332 bytes security) (deflated 53%) adding: html/isBimera.html (332 bytes security) (deflated 57%) adding: html/isBimeraDenovo.html (332 bytes security) (deflated 62%) adding: html/isBimeraDenovoTable.html (332 bytes security) (deflated 62%) adding: html/isPhiX.html (332 bytes security) (deflated 56%) adding: html/isShiftDenovo.html (332 bytes security) (deflated 55%) adding: html/learnErrors.html (332 bytes security) (deflated 62%) adding: html/loessErrfun.html (332 bytes security) (deflated 52%) adding: html/makeSequenceTable.html (332 bytes security) (deflated 55%) adding: html/makeSpeciesFasta_RDP.html (332 bytes security) (deflated 45%) adding: html/makeSpeciesFasta_Silva.html (332 bytes security) (deflated 45%) adding: html/makeTaxonomyFasta_RDP.html (332 bytes security) (deflated 46%) adding: html/makeTaxonomyFasta_Silva.html (332 bytes security) (deflated 47%) adding: html/mergePairs.html (332 bytes security) (deflated 70%) adding: html/mergePairsByID.html (332 bytes security) (deflated 69%) adding: html/mergeSequenceTables.html (332 bytes security) (deflated 61%) adding: html/names-set-dada-ANY-method.html (332 bytes security) (deflated 48%) adding: html/names-set-derep-ANY-method.html (332 bytes security) (deflated 49%) adding: html/noqualErrfun.html (332 bytes security) (deflated 52%) adding: html/nwalign.html (332 bytes security) (deflated 63%) adding: html/nwhamming.html (332 bytes security) (deflated 53%) adding: html/plotComplementarySubstitutions.html (332 bytes security) (deflated 51%) adding: html/plotErrors.html (332 bytes security) (deflated 61%) adding: html/plotQualityProfile.html (332 bytes security) (deflated 53%) adding: html/qtables2.html (332 bytes security) (deflated 47%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/removeBimeraDenovo.html (332 bytes security) (deflated 62%) adding: html/setDadaOpt.html (332 bytes security) (deflated 55%) adding: html/show-methods.html (332 bytes security) (deflated 50%) adding: html/tperr1.html (332 bytes security) (deflated 41%) adding: html/uniques-vector.html (332 bytes security) (deflated 52%) adding: html/uniquesToFasta.html (332 bytes security) (deflated 59%) adding: html/writeFasta.html (332 bytes security) (deflated 59%) adding: include/ (372 bytes security) (stored 0%) adding: include/dada2.h (332 bytes security) (deflated 26%) adding: include/dada2_RcppExports.h (332 bytes security) (deflated 49%) adding: INDEX (332 bytes security) (deflated 69%) adding: libs/ (372 bytes security) (stored 0%) adding: libs/i386/ (372 bytes security) (stored 0%) adding: libs/i386/dada2.dll (332 bytes security) (deflated 64%) adding: libs/x64/ (372 bytes security) (stored 0%) adding: libs/x64/dada2.dll (332 bytes security) (deflated 64%) adding: MD5 (332 bytes security) (deflated 48%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/data.rds (332 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 73%) adding: NEWS (332 bytes security) (deflated 66%) adding: R/ (372 bytes security) (stored 0%) adding: R/dada2 (332 bytes security) (deflated 41%) adding: R/dada2.rdb (332 bytes security) (deflated 24%) adding: R/dada2.rdx (332 bytes security) (stored 0%)