Valerie Obenchain
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/VariantAnnotation |
| Branch: RELEASE_3_6 |
| Last Commit: 468d7f5 |
| Last Changed Date: 2018-01-04 14:55:50 -0400 (Thu, 04 Jan 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:21:04 -0400 (Thu, 12 Apr 2018).
| Package 1443/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| VariantAnnotation 1.24.5 Valerie Obenchain
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: VariantAnnotation |
| Version: 1.24.5 |
| Command: cd VariantAnnotation.buildbin-libdir/VariantAnnotation && zip -r ../../VariantAnnotation_1.24.5.zip . & cd ../.. |
| StartedAt: 2018-04-12 05:07:35 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 05:08:06 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 31.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: VariantAnnotation_1.24.5.zip |
| PackageFileSize: 5.092 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd VariantAnnotation.buildbin-libdir/VariantAnnotation && zip -r ../../VariantAnnotation_1.24.5.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: CITATION (332 bytes security) (deflated 57%) adding: DESCRIPTION (332 bytes security) (deflated 49%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/filterVcf.pdf (332 bytes security) (deflated 10%) adding: doc/filterVcf.R (332 bytes security) (deflated 69%) adding: doc/filterVcf.Rnw (332 bytes security) (deflated 58%) adding: doc/index.html (332 bytes security) (deflated 68%) adding: doc/VariantAnnotation.pdf (332 bytes security) (deflated 15%) adding: doc/VariantAnnotation.R (332 bytes security) (deflated 77%) adding: doc/VariantAnnotation.Rnw (332 bytes security) (deflated 62%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/chr22.vcf.gz (332 bytes security) (deflated 0%) adding: extdata/chr22.vcf.gz.tbi (332 bytes security) (deflated 3%) adding: extdata/chr7-sub.vcf.gz (332 bytes security) (deflated 0%) adding: extdata/chr7-sub.vcf.gz.tbi (332 bytes security) (deflated 5%) adding: extdata/ex2.vcf (332 bytes security) (deflated 53%) adding: extdata/gl_chr1.vcf (332 bytes security) (deflated 80%) adding: extdata/h1187-10k.vcf.gz (332 bytes security) (deflated 0%) adding: extdata/h1187-10k.vcf.gz.tbi (332 bytes security) (stored 0%) adding: extdata/hapmap_exome_chr22.vcf.gz (332 bytes security) (deflated 0%) adding: extdata/hapmap_exome_chr22.vcf.gz.tbi (332 bytes security) (deflated 4%) adding: extdata/structural.vcf (332 bytes security) (deflated 63%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 86%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: help/VariantAnnotation.rdb (332 bytes security) (deflated 1%) adding: help/VariantAnnotation.rdx (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 91%) adding: html/defunct.html (332 bytes security) (deflated 69%) adding: html/filterVcf-methods.html (332 bytes security) (deflated 63%) adding: html/genotypeToSnpMatrix-methods.html (332 bytes security) (deflated 66%) adding: html/getTranscriptSeqs-methods.html (332 bytes security) (deflated 63%) adding: html/GLtoGP.html (332 bytes security) (deflated 61%) adding: html/indexVcf-method.html (332 bytes security) (deflated 57%) adding: html/isSNV-methods.html (332 bytes security) (deflated 69%) adding: html/locateVariants-methods.html (332 bytes security) (deflated 71%) adding: html/PolyPhenDb-class.html (332 bytes security) (deflated 59%) adding: html/PolyPhenDbColumns.html (332 bytes security) (deflated 66%) adding: html/predictCoding-methods.html (332 bytes security) (deflated 69%) adding: html/probabilityToSnpMatrix.html (332 bytes security) (deflated 58%) adding: html/PROVEANDb-class.html (332 bytes security) (deflated 58%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/readVcf-methods.html (332 bytes security) (deflated 70%) adding: html/scanVcf-methods.html (332 bytes security) (deflated 63%) adding: html/ScanVcfParam-class.html (332 bytes security) (deflated 67%) adding: html/seqinfo-method.html (332 bytes security) (deflated 52%) adding: html/SIFTDb-class.html (332 bytes security) (deflated 57%) adding: html/SIFTDbColumns.html (332 bytes security) (deflated 53%) adding: html/snpSummary.html (332 bytes security) (deflated 58%) adding: html/summarizeVariants-methods.html (332 bytes security) (deflated 68%) adding: html/VariantType-class.html (332 bytes security) (deflated 69%) adding: html/VCF-class.html (332 bytes security) (deflated 71%) adding: html/VcfFile-class.html (332 bytes security) (deflated 61%) adding: html/VCFHeader-class.html (332 bytes security) (deflated 66%) adding: html/VRanges-class.html (332 bytes security) (deflated 70%) adding: html/VRangesList-class.html (332 bytes security) (deflated 55%) adding: html/writeVcf-methods.html (332 bytes security) (deflated 60%) adding: INDEX (332 bytes security) (deflated 65%) adding: libs/ (372 bytes security) (stored 0%) adding: libs/i386/ (372 bytes security) (stored 0%) adding: libs/i386/VariantAnnotation.dll (332 bytes security) (deflated 55%) adding: libs/x64/ (372 bytes security) (stored 0%) adding: libs/x64/VariantAnnotation.dll (332 bytes security) (deflated 53%) adding: MD5 (332 bytes security) (deflated 51%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 63%) adding: NEWS (332 bytes security) (deflated 65%) adding: R/ (372 bytes security) (stored 0%) adding: R/VariantAnnotation (332 bytes security) (deflated 41%) adding: R/VariantAnnotation.rdb (332 bytes security) (deflated 29%) adding: R/VariantAnnotation.rdx (332 bytes security) (deflated 5%) adding: scripts/ (372 bytes security) (stored 0%) adding: scripts/test_Rplinkseq.R (332 bytes security) (deflated 68%) adding: unitTests/ (372 bytes security) (stored 0%) adding: unitTests/cases/ (372 bytes security) (stored 0%) adding: unitTests/cases/banded_gvcf.vcf (332 bytes security) (deflated 63%) adding: unitTests/cases/expand.vcf (332 bytes security) (deflated 68%) adding: unitTests/cases/fewer-FORMAT-than-GENO.vcf (332 bytes security) (deflated 45%) adding: unitTests/cases/FORMAT_header_no_SAMPLEs.vcf (332 bytes security) (deflated 47%) adding: unitTests/cases/missing-FORMAT-metadata-elt.vcf (332 bytes security) (deflated 42%) adding: unitTests/cases/mixedStructural.vcf (332 bytes security) (deflated 63%) adding: unitTests/cases/multiple_INFO_fields.vcf (332 bytes security) (deflated 30%) adding: unitTests/cases/negative_FORMAT_Number.vcf (332 bytes security) (deflated 64%) adding: unitTests/cases/no_FORMAT_column.vcf (332 bytes security) (deflated 31%) adding: unitTests/cases/no_GENO_row.vcf (332 bytes security) (deflated 43%) adding: unitTests/cases/no_INFO_header.vcf (332 bytes security) (deflated 36%) adding: unitTests/cases/unspecified_INFO_FORMAT_fields.vcf (332 bytes security) (deflated 51%) adding: unitTests/cases/VarScan_header.vcf (332 bytes security) (deflated 58%) adding: unitTests/test_expand-methods.R (332 bytes security) (deflated 70%) adding: unitTests/test_filterVcf.R (332 bytes security) (deflated 78%) adding: unitTests/test_genotypeToSnpMatrix.R (332 bytes security) (deflated 82%) adding: unitTests/test_isSNV.R (332 bytes security) (deflated 78%) adding: unitTests/test_locateVariants-methods.R (332 bytes security) (deflated 73%) adding: unitTests/test_predictCoding-methods.R (332 bytes security) (deflated 77%) adding: unitTests/test_readVcf-methods.R (332 bytes security) (deflated 75%) adding: unitTests/test_scanVcf.R (332 bytes security) (deflated 68%) adding: unitTests/test_ScanVcfParam-class.R (332 bytes security) (deflated 73%) adding: unitTests/test_SIFTandPolyPhen.R (332 bytes security) (deflated 66%) adding: unitTests/test_snpSummary.R (332 bytes security) (deflated 66%) adding: unitTests/test_summarizeVariants-methods.R (332 bytes security) (deflated 49%) adding: unitTests/test_VCF-class.R (332 bytes security) (deflated 78%) adding: unitTests/test_VRanges-class.R (332 bytes security) (deflated 76%) adding: unitTests/test_writeVcf-methods.R (332 bytes security) (deflated 79%)