Back to Multiple platform build/check report for BioC 3.6
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

INSTALL report for TargetSearch on tokay1

This page was generated on 2018-04-12 13:19:41 -0400 (Thu, 12 Apr 2018).

Package 1384/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TargetSearch 1.34.0
Alvaro Cuadros-Inostroza
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/TargetSearch
Branch: RELEASE_3_6
Last Commit: 94fa3c1
Last Changed Date: 2017-10-30 12:39:26 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: TargetSearch
Version: 1.34.0
Command: rm -rf TargetSearch.buildbin-libdir && mkdir TargetSearch.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/TargetSearch_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=TargetSearch.buildbin-libdir --merge-multiarch TargetSearch_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL TargetSearch_1.34.0.zip && rm TargetSearch_1.34.0.tar.gz TargetSearch_1.34.0.zip
StartedAt: 2018-04-11 18:11:30 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:15:05 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 214.5 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf TargetSearch.buildbin-libdir && mkdir TargetSearch.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/TargetSearch_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=TargetSearch.buildbin-libdir --merge-multiarch TargetSearch_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL TargetSearch_1.34.0.zip  && rm TargetSearch_1.34.0.tar.gz TargetSearch_1.34.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  133k  100  133k    0     0   205k      0 --:--:-- --:--:-- --:--:--  206k

install for i386

* installing *source* package 'TargetSearch' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c Rinit.c -o Rinit.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c file.c -o file.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c find_peaks.c -o find_peaks.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c getLine.c -o getLine.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c hpf.c -o hpf.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ncdf.c -o ncdf.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c netcdf_peak_finding.c -o netcdf_peak_finding.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c peakExtraction.c -o peakExtraction.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c ppc.c -o ppc.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o TargetSearch.dll tmp.def Rinit.o file.o find_peaks.o getLine.o hpf.o ncdf.o netcdf_peak_finding.o peakExtraction.o ppc.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/TargetSearch.buildbin-libdir/TargetSearch/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'TargetSearch'
    finding HTML links ... done
    FAMEoutliers                            html  
    FindPeaks                               html  
    ImportFameSettings                      html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpcBzwL9/R.INSTALL13b017f111c3/TargetSearch/man/ImportFameSettings.Rd:13: missing file link 'read.delim'
    ImportLibrary                           html  
    ImportSamples                           html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpcBzwL9/R.INSTALL13b017f111c3/TargetSearch/man/ImportSamples.Rd:26: missing file link 'read.delim'
    NetCDFPeakFinding                       html  
    Profile                                 html  
    ProfileCleanUp                          html  
    RIcorrect                               html  
    TargetSearch-package                    html  
    TargetSearchGUI                         html  
    Write.Results                           html  
    baseline                                html  
    defunct                                 html  
    file                                    html  
    fixRI                                   html  
    medianRILib                             html  
    peakCDFextraction                       html  
    peakFind                                html  
    plotFAME                                html  
    plotPeak                                html  
    plotPeakSimple                          html  
    plotRIdev                               html  
    plotSpectra                             html  
    quantMatrix                             html  
    ri2rt                                   html  
    riMatrix                                html  
    rt2ri                                   html  
    sampleRI                                html  
    tsLib-class                             html  
    tsMSdata-class                          html  
    tsProfile-class                         html  
    tsRim-class                             html  
    tsSample-class                          html  
    writeLibText                            html  
    writeMSP                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'TargetSearch' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c Rinit.c -o Rinit.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c file.c -o file.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c find_peaks.c -o find_peaks.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c getLine.c -o getLine.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c hpf.c -o hpf.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ncdf.c -o ncdf.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c netcdf_peak_finding.c -o netcdf_peak_finding.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c peakExtraction.c -o peakExtraction.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c ppc.c -o ppc.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o TargetSearch.dll tmp.def Rinit.o file.o find_peaks.o getLine.o hpf.o ncdf.o netcdf_peak_finding.o peakExtraction.o ppc.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/TargetSearch.buildbin-libdir/TargetSearch/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TargetSearch' as TargetSearch_1.34.0.zip
* DONE (TargetSearch)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'TargetSearch' successfully unpacked and MD5 sums checked
In R CMD INSTALL