Antonio Colaprico
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/TCGAbiolinks |
| Branch: RELEASE_3_6 |
| Last Commit: 933a014 |
| Last Changed Date: 2018-02-02 10:51:08 -0400 (Fri, 02 Feb 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:26:44 -0400 (Thu, 12 Apr 2018).
| Package 1387/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| TCGAbiolinks 2.6.12 Antonio Colaprico
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | ERROR | |||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: TCGAbiolinks |
| Version: 2.6.12 |
| Command: cd TCGAbiolinks.buildbin-libdir/TCGAbiolinks && zip -r ../../TCGAbiolinks_2.6.12.zip . & cd ../.. |
| StartedAt: 2018-04-12 05:05:55 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 05:06:38 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 42.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: TCGAbiolinks_2.6.12.zip |
| PackageFileSize: 81.19 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd TCGAbiolinks.buildbin-libdir/TCGAbiolinks && zip -r ../../TCGAbiolinks_2.6.12.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: CITATION (332 bytes security) (deflated 71%) adding: data/ (372 bytes security) (stored 0%) adding: data/datalist (332 bytes security) (deflated 29%) adding: data/Rdata.rdb (332 bytes security) (deflated 1%) adding: data/Rdata.rds (332 bytes security) (stored 0%) adding: data/Rdata.rdx (332 bytes security) (stored 0%) adding: DESCRIPTION (332 bytes security) (deflated 48%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/analysis.html (332 bytes security) (deflated 32%) adding: doc/analysis.R (332 bytes security) (deflated 79%) adding: doc/analysis.Rmd (332 bytes security) (deflated 74%) adding: doc/casestudy.html (332 bytes security) (deflated 29%) adding: doc/casestudy.R (332 bytes security) (deflated 81%) adding: doc/casestudy.Rmd (332 bytes security) (deflated 73%) adding: doc/clinical.html (332 bytes security) (deflated 60%) adding: doc/clinical.R (332 bytes security) (deflated 79%) adding: doc/clinical.Rmd (332 bytes security) (deflated 73%) adding: doc/download_prepare.html (332 bytes security) (deflated 58%) adding: doc/download_prepare.R (332 bytes security) (deflated 78%) adding: doc/download_prepare.Rmd (332 bytes security) (deflated 76%) adding: doc/extension.html (332 bytes security) (deflated 57%) adding: doc/extension.R (332 bytes security) (deflated 81%) adding: doc/extension.Rmd (332 bytes security) (deflated 70%) adding: doc/gui.html (332 bytes security) (deflated 56%) adding: doc/gui.R (332 bytes security) (deflated 66%) adding: doc/gui.Rmd (332 bytes security) (deflated 57%) adding: doc/index.html (332 bytes security) (deflated 56%) adding: doc/index.R (332 bytes security) (deflated 62%) adding: doc/index.Rmd (332 bytes security) (deflated 49%) adding: doc/mutation.html (332 bytes security) (deflated 59%) adding: doc/mutation.R (332 bytes security) (deflated 76%) adding: doc/mutation.Rmd (332 bytes security) (deflated 69%) adding: doc/query.html (332 bytes security) (deflated 59%) adding: doc/query.R (332 bytes security) (deflated 80%) adding: doc/query.Rmd (332 bytes security) (deflated 71%) adding: doc/subtypes.html (332 bytes security) (deflated 58%) adding: doc/subtypes.R (332 bytes security) (deflated 60%) adding: doc/subtypes.Rmd (332 bytes security) (deflated 78%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 69%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: help/TCGAbiolinks.rdb (332 bytes security) (deflated 2%) adding: help/TCGAbiolinks.rdx (332 bytes security) (deflated 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 75%) adding: html/batch.info.html (332 bytes security) (deflated 46%) adding: html/bcgsc.ca_CHOL.IlluminaHiSeq_DNASeq.1.somatic.maf.html (332 bytes security) (deflated 42%) adding: html/BRCA_rnaseqv2.html (332 bytes security) (deflated 41%) adding: html/calculate.pvalues.html (332 bytes security) (deflated 59%) adding: html/chol_maf.html (332 bytes security) (deflated 44%) adding: html/clinBRCA.html (332 bytes security) (deflated 42%) adding: html/clinical.biotab.html (332 bytes security) (deflated 48%) adding: html/colDataPrepare.html (332 bytes security) (deflated 52%) adding: html/dataBRCA.html (332 bytes security) (deflated 42%) adding: html/dataDEGsFiltLevel.html (332 bytes security) (deflated 43%) adding: html/dataREAD.html (332 bytes security) (deflated 45%) adding: html/dataREAD_df.html (332 bytes security) (deflated 42%) adding: html/diffmean.html (332 bytes security) (deflated 57%) adding: html/gaiaCNVplot.html (332 bytes security) (deflated 59%) adding: html/gbm.exp.harmonized.html (332 bytes security) (deflated 49%) adding: html/gbm.exp.legacy.html (332 bytes security) (deflated 50%) adding: html/GDCdownload.html (332 bytes security) (deflated 60%) adding: html/GDCprepare.html (332 bytes security) (deflated 61%) adding: html/GDCprepare_clinic.html (332 bytes security) (deflated 60%) adding: html/GDCquery.html (332 bytes security) (deflated 75%) adding: html/GDCquery_clinic.html (332 bytes security) (deflated 55%) adding: html/GDCquery_Maf.html (332 bytes security) (deflated 56%) adding: html/geneInfo.html (332 bytes security) (deflated 45%) adding: html/geneInfoHT.html (332 bytes security) (deflated 45%) adding: html/GenesCutID.html (332 bytes security) (deflated 45%) adding: html/GeneSplitRegulon.html (332 bytes security) (deflated 50%) adding: html/getAdjacencyBiogrid.html (332 bytes 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security) (deflated 75%) adding: html/TabSubtypesCol_merged.html (332 bytes security) (deflated 49%) adding: html/tabSurvKMcompleteDEGs.html (332 bytes security) (deflated 43%) adding: html/TCGAanalyze_analyseGRN.html (332 bytes security) (deflated 51%) adding: html/TCGAanalyze_Clustering.html (332 bytes security) (deflated 53%) adding: html/TCGAanalyze_DEA.html (332 bytes security) (deflated 65%) adding: html/TCGAanalyze_DEA_Affy.html (332 bytes security) (deflated 50%) adding: html/TCGAanalyze_DMR.html (332 bytes security) (deflated 66%) adding: html/TCGAanalyze_EA.html (332 bytes security) (deflated 57%) adding: html/TCGAanalyze_EAcomplete.html (332 bytes security) (deflated 53%) adding: html/TCGAanalyze_Filtering.html (332 bytes security) (deflated 61%) adding: html/TCGAanalyze_LevelTab.html (332 bytes security) (deflated 60%) adding: html/TCGAanalyze_networkInference.html (332 bytes security) (deflated 50%) adding: html/TCGAanalyze_Normalization.html (332 bytes security) (deflated 56%) adding: html/TCGAanalyze_Pathview.html (332 bytes security) (deflated 49%) adding: html/TCGAanalyze_Preprocessing.html (332 bytes security) (deflated 58%) adding: html/TCGAanalyze_survival.html (332 bytes security) (deflated 66%) adding: html/TCGAanalyze_SurvivalKM.html (332 bytes security) (deflated 67%) adding: html/TCGAbatch_Correction.html (332 bytes security) (deflated 56%) adding: html/TCGAbiolinks.html (332 bytes security) (deflated 46%) adding: html/TCGAprepare_Affy.html (332 bytes security) (deflated 52%) adding: html/TCGAquery_MatchedCoupledSampleTypes.html (332 bytes security) (deflated 59%) adding: html/TCGAquery_recount2.html (332 bytes security) (deflated 57%) adding: html/TCGAquery_SampleTypes.html (332 bytes security) (deflated 70%) adding: html/TCGAquery_subtype.html (332 bytes security) (deflated 60%) adding: html/TCGAtumor_purity.html (332 bytes security) (deflated 56%) adding: html/TCGAvisualize_BarPlot.html (332 bytes security) (deflated 63%) adding: html/TCGAvisualize_EAbarplot.html (332 bytes security) (deflated 63%) adding: html/TCGAvisualize_Heatmap.html (332 bytes security) (deflated 70%) adding: html/TCGAvisualize_meanMethylation.html (332 bytes security) (deflated 70%) adding: html/TCGAvisualize_oncoprint.html (332 bytes security) (deflated 69%) adding: html/TCGAvisualize_PCA.html (332 bytes security) (deflated 58%) adding: html/TCGAvisualize_starburst.html (332 bytes security) (deflated 71%) adding: html/TCGAvisualize_SurvivalCoxNET.html (332 bytes security) (deflated 63%) adding: html/TCGAVisualize_volcano.html (332 bytes security) (deflated 68%) adding: html/TCGA_MolecularSubtype.html (332 bytes security) (deflated 51%) adding: html/Tumor.purity.html (332 bytes security) (deflated 52%) adding: html/UseRaw_afterFilter.html (332 bytes security) (deflated 52%) adding: INDEX (332 bytes security) (deflated 68%) adding: MD5 (332 bytes security) (deflated 50%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/data.rds 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