Xi Wang
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/SeqGSEA |
| Branch: RELEASE_3_6 |
| Last Commit: b46f32a |
| Last Changed Date: 2017-10-30 12:40:01 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:22:43 -0400 (Thu, 12 Apr 2018).
| Package 1276/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SeqGSEA 1.18.0 Xi Wang
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | WARNINGS | OK | |
| Package: SeqGSEA |
| Version: 1.18.0 |
| Command: cd SeqGSEA.buildbin-libdir/SeqGSEA && zip -r ../../SeqGSEA_1.18.0.zip . & cd ../.. |
| StartedAt: 2018-04-12 05:03:01 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 05:03:32 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 30.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: SeqGSEA_1.18.0.zip |
| PackageFileSize: 2.827 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd SeqGSEA.buildbin-libdir/SeqGSEA && zip -r ../../SeqGSEA_1.18.0.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: CITATION (332 bytes security) (deflated 62%) adding: data/ (372 bytes security) (stored 0%) adding: data/DEscore.perm.RData (332 bytes security) (deflated 0%) adding: data/DEscore.RData (332 bytes security) (stored 0%) adding: data/DSscore.perm.RData (332 bytes security) (deflated 0%) adding: data/DSscore.RData (332 bytes security) (stored 0%) adding: data/GS_example.RData (332 bytes security) (stored 0%) adding: data/RCS_example.RData (332 bytes security) (deflated 12%) adding: DESCRIPTION (332 bytes security) (deflated 45%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/index.html (332 bytes security) (deflated 57%) adding: doc/SeqGSEA.pdf (332 bytes security) (deflated 13%) adding: doc/SeqGSEA.R (332 bytes security) (deflated 83%) adding: doc/SeqGSEA.Rnw (332 bytes security) (deflated 73%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/geneCounts.txt (332 bytes security) (deflated 59%) adding: extdata/gs_symb.txt (332 bytes security) (deflated 56%) adding: extdata/SC02.exonCnt.txt (332 bytes security) (deflated 85%) adding: extdata/SC03.exonCnt.txt (332 bytes security) (deflated 86%) adding: extdata/SC06.exonCnt.txt (332 bytes security) (deflated 85%) adding: extdata/SC08.exonCnt.txt (332 bytes security) (deflated 86%) adding: extdata/SC09.exonCnt.txt (332 bytes security) (deflated 86%) adding: extdata/SC11.exonCnt.txt (332 bytes security) (deflated 85%) adding: extdata/SC13.exonCnt.txt (332 bytes security) (deflated 84%) adding: extdata/SC15.exonCnt.txt (332 bytes security) (deflated 85%) adding: extdata/SC19.exonCnt.txt (332 bytes security) (deflated 85%) adding: extdata/SC23.exonCnt.txt (332 bytes security) (deflated 85%) adding: extdata/SN02.exonCnt.txt (332 bytes security) (deflated 86%) adding: extdata/SN03.exonCnt.txt (332 bytes security) (deflated 86%) adding: extdata/SN06.exonCnt.txt (332 bytes security) (deflated 86%) adding: extdata/SN08.exonCnt.txt (332 bytes security) (deflated 86%) adding: extdata/SN09.exonCnt.txt (332 bytes security) (deflated 86%) adding: extdata/SN11.exonCnt.txt (332 bytes security) (deflated 85%) adding: extdata/SN13.exonCnt.txt (332 bytes security) (deflated 85%) adding: extdata/SN15.exonCnt.txt (332 bytes security) (deflated 85%) adding: extdata/SN19.exonCnt.txt (332 bytes security) (deflated 85%) adding: extdata/SN23.exonCnt.txt (332 bytes security) (deflated 85%) adding: extscripts/ (372 bytes security) (stored 0%) adding: extscripts/count_in_exons.py (332 bytes security) (deflated 66%) adding: extscripts/prepare_exon_annotation_ensembl.py (332 bytes security) (deflated 61%) adding: extscripts/prepare_exon_annotation_refseq.py (332 bytes security) (deflated 62%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 69%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: help/SeqGSEA.rdb (332 bytes security) (deflated 3%) adding: help/SeqGSEA.rdx (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 81%) adding: html/calES.html (332 bytes security) (deflated 55%) adding: html/calES.perm.html (332 bytes security) (deflated 57%) adding: html/convertEnsembl2Symbol.html (332 bytes security) (deflated 52%) adding: html/convertSymbol2Ensembl.html (332 bytes security) (deflated 51%) adding: html/counts-methods.html (332 bytes security) (deflated 53%) adding: html/DENBStat4GSEA.html (332 bytes security) (deflated 55%) adding: html/DENBStatPermut4GSEA.html (332 bytes security) (deflated 59%) adding: html/DENBTest.html (332 bytes security) (deflated 52%) adding: html/DEpermutePval.html (332 bytes security) (deflated 59%) adding: html/DEscore.html (332 bytes security) (deflated 47%) adding: html/DSpermute4GSEA.html (332 bytes security) (deflated 58%) adding: html/DSpermutePval.html (332 bytes security) (deflated 60%) adding: html/DSresultExonTable.html (332 bytes security) (deflated 57%) adding: html/DSresultGeneTable.html (332 bytes security) (deflated 56%) adding: html/estiExonNBstat.html (332 bytes security) (deflated 54%) adding: html/estiGeneNBstat.html (332 bytes security) (deflated 54%) adding: html/exonID.html (332 bytes security) (deflated 54%) adding: html/exonTestability.html (332 bytes security) (deflated 52%) adding: html/geneID.html (332 bytes security) (deflated 54%) adding: html/geneList.html (332 bytes security) (deflated 52%) adding: html/genePermuteScore.html (332 bytes security) (deflated 58%) adding: html/geneScore.html (332 bytes security) (deflated 57%) adding: html/geneSetDescs.html (332 bytes security) (deflated 56%) adding: html/geneSetNames.html (332 bytes security) (deflated 55%) adding: html/geneSetSize.html (332 bytes security) (deflated 56%) adding: html/geneTestability.html (332 bytes security) (deflated 54%) adding: html/genpermuteMat.html (332 bytes security) (deflated 56%) adding: html/getGeneCount.html (332 bytes security) (deflated 53%) adding: html/GSEAresultTable.html (332 bytes security) (deflated 57%) adding: html/GSEnrichAnalyze.html (332 bytes security) (deflated 59%) adding: html/GS_example.html (332 bytes security) (deflated 41%) adding: html/label.html (332 bytes security) (deflated 51%) adding: html/loadExonCountData.html (332 bytes security) (deflated 56%) adding: html/loadGenesets.html (332 bytes security) (deflated 58%) adding: html/newGeneSets.html (332 bytes security) (deflated 62%) adding: html/newReadCountSet.html (332 bytes security) (deflated 56%) adding: html/normES.html (332 bytes security) (deflated 50%) adding: html/normFactor.html (332 bytes security) (deflated 55%) adding: html/plotES.html (332 bytes security) (deflated 57%) adding: html/plotGeneScore.html (332 bytes security) (deflated 53%) adding: html/plotSig.html (332 bytes security) (deflated 56%) adding: html/plotSigGeneSet.html (332 bytes security) (deflated 61%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/rankCombine.html (332 bytes security) (deflated 62%) adding: html/RCS_example.html (332 bytes security) (deflated 43%) adding: html/ReadCountSet-class.html (332 bytes security) (deflated 66%) adding: html/runDESeq.html (332 bytes security) (deflated 55%) adding: html/runSeqGSEA.html (332 bytes security) (deflated 65%) adding: html/scoreNormalization.html (332 bytes security) (deflated 56%) adding: html/SeqGeneSet-class.html (332 bytes security) (deflated 71%) adding: html/SeqGSEA-package.html (332 bytes security) (deflated 76%) adding: html/signifES.html (332 bytes security) (deflated 50%) adding: html/size.html (332 bytes security) (deflated 52%) adding: html/subsetByGenes.html (332 bytes security) (deflated 55%) adding: html/topDEGenes.html (332 bytes security) (deflated 55%) adding: html/topDSExons.html (332 bytes security) (deflated 56%) adding: html/topDSGenes.html (332 bytes security) (deflated 56%) adding: html/topGeneSets.html (332 bytes security) (deflated 56%) adding: html/writeScores.html (332 bytes security) (deflated 59%) adding: html/writeSigGeneSet.html (332 bytes security) (deflated 61%) adding: INDEX (332 bytes security) (deflated 73%) adding: MD5 (332 bytes security) (deflated 51%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/data.rds (332 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 63%) adding: NEWS (332 bytes security) (deflated 44%) adding: R/ (372 bytes security) (stored 0%) adding: R/SeqGSEA (332 bytes security) (deflated 41%) adding: R/SeqGSEA.rdb (332 bytes security) (deflated 26%) adding: R/SeqGSEA.rdx (332 bytes security) (stored 0%)