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CHECK report for SVAPLSseq on tokay1

This page was generated on 2018-04-12 13:28:34 -0400 (Thu, 12 Apr 2018).

Package 1371/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SVAPLSseq 1.4.0
Sutirtha Chakraborty
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/SVAPLSseq
Branch: RELEASE_3_6
Last Commit: ecb0684
Last Changed Date: 2017-10-30 12:41:21 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: SVAPLSseq
Version: 1.4.0
Command: rm -rf SVAPLSseq.buildbin-libdir SVAPLSseq.Rcheck && mkdir SVAPLSseq.buildbin-libdir SVAPLSseq.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=SVAPLSseq.buildbin-libdir SVAPLSseq_1.4.0.tar.gz >SVAPLSseq.Rcheck\00install.out 2>&1 && cp SVAPLSseq.Rcheck\00install.out SVAPLSseq-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=SVAPLSseq.buildbin-libdir --install="check:SVAPLSseq-install.out" --force-multiarch --no-vignettes --timings SVAPLSseq_1.4.0.tar.gz
StartedAt: 2018-04-12 03:30:06 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 03:33:35 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 209.6 seconds
RetCode: 0
Status:  OK  
CheckDir: SVAPLSseq.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf SVAPLSseq.buildbin-libdir SVAPLSseq.Rcheck && mkdir SVAPLSseq.buildbin-libdir SVAPLSseq.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=SVAPLSseq.buildbin-libdir SVAPLSseq_1.4.0.tar.gz >SVAPLSseq.Rcheck\00install.out 2>&1 && cp SVAPLSseq.Rcheck\00install.out SVAPLSseq-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=SVAPLSseq.buildbin-libdir --install="check:SVAPLSseq-install.out" --force-multiarch --no-vignettes --timings SVAPLSseq_1.4.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/SVAPLSseq.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SVAPLSseq/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SVAPLSseq' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVAPLSseq' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

SVAPLSseq.Rcheck/00install.out


install for i386

* installing *source* package 'SVAPLSseq' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'SVAPLSseq'
    finding HTML links ... done
    SVAPLSseq-package                       html  
    prop.vars                               html  
    pvs.adj                                 html  
    pvs.unadj                               html  
    sig.features                            html  
    sim.dat                                 html  
    surr                                    html  
    svplsSurr-class                         html  
    svplsSurr                               html  
    svplsTest-class                         html  
    svplsTest                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'SVAPLSseq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SVAPLSseq' as SVAPLSseq_1.4.0.zip
* DONE (SVAPLSseq)
In R CMD INSTALL
In R CMD INSTALL

Tests output


Example timings

SVAPLSseq.Rcheck/examples_i386/SVAPLSseq-Ex.timings

nameusersystemelapsed
SVAPLSseq-package2.220.032.25
prop.vars1.580.051.62
pvs.adj1.890.031.93
pvs.unadj1.840.021.85
sig.features2.140.042.19
surr1.690.031.72
svplsSurr1.560.041.59
svplsTest1.650.061.71

SVAPLSseq.Rcheck/examples_x64/SVAPLSseq-Ex.timings

nameusersystemelapsed
SVAPLSseq-package2.750.032.78
prop.vars2.080.032.11
pvs.adj2.390.072.45
pvs.unadj1.450.061.51
sig.features1.520.011.54
surr1.560.021.57
svplsSurr1.580.001.58
svplsTest1.730.081.81