Leonard Goldstein
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/SGSeq |
| Branch: RELEASE_3_6 |
| Last Commit: 1c0a60b |
| Last Changed Date: 2017-10-30 12:40:43 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:25:15 -0400 (Thu, 12 Apr 2018).
| Package 1284/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SGSeq 1.12.0 Leonard Goldstein
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: SGSeq |
| Version: 1.12.0 |
| Command: cd SGSeq.buildbin-libdir/SGSeq && zip -r ../../SGSeq_1.12.0.zip . & cd ../.. |
| StartedAt: 2018-04-12 05:03:14 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 05:03:44 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 30.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: SGSeq_1.12.0.zip |
| PackageFileSize: 3.049 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd SGSeq.buildbin-libdir/SGSeq && zip -r ../../SGSeq_1.12.0.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: CITATION (332 bytes security) (deflated 53%) adding: data/ (372 bytes security) (stored 0%) adding: data/Rdata.rdb (332 bytes security) (deflated 32%) adding: data/Rdata.rds (332 bytes security) (stored 0%) adding: data/Rdata.rdx (332 bytes security) (stored 0%) adding: DESCRIPTION (332 bytes security) (deflated 46%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/index.html (332 bytes security) (deflated 58%) adding: doc/SGSeq.html (332 bytes security) (deflated 57%) adding: doc/SGSeq.R (332 bytes security) (deflated 79%) adding: doc/SGSeq.Rmd (332 bytes security) (deflated 67%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/bams/ (372 bytes security) (stored 0%) adding: extdata/bams/N1.bam (332 bytes security) (deflated 0%) adding: extdata/bams/N1.bam.bai (332 bytes security) (deflated 99%) adding: extdata/bams/N2.bam (332 bytes security) (deflated 0%) adding: extdata/bams/N2.bam.bai (332 bytes security) (deflated 100%) adding: extdata/bams/N3.bam (332 bytes security) (deflated 0%) adding: extdata/bams/N3.bam.bai (332 bytes security) (deflated 99%) adding: extdata/bams/N4.bam (332 bytes security) (deflated 0%) adding: extdata/bams/N4.bam.bai (332 bytes security) (deflated 100%) adding: extdata/bams/T1.bam (332 bytes security) (deflated 0%) adding: extdata/bams/T1.bam.bai (332 bytes security) (deflated 100%) adding: extdata/bams/T2.bam (332 bytes security) (deflated 0%) adding: extdata/bams/T2.bam.bai (332 bytes security) (deflated 99%) adding: extdata/bams/T3.bam (332 bytes security) (deflated 0%) adding: extdata/bams/T3.bam.bai (332 bytes security) (deflated 99%) adding: extdata/bams/T4.bam (332 bytes security) (deflated 0%) adding: extdata/bams/T4.bam.bai (332 bytes security) (deflated 100%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 84%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: help/SGSeq.rdb (332 bytes security) (deflated 2%) adding: help/SGSeq.rdx (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 89%) adding: html/analyzeFeatures.html (332 bytes security) (deflated 65%) adding: html/analyzeVariants.html (332 bytes security) (deflated 58%) adding: html/annotate.html (332 bytes security) (deflated 56%) adding: html/annotateSGVariants.html (332 bytes security) (deflated 62%) adding: html/assays.html (332 bytes security) (deflated 64%) adding: html/convertToSGFeatures.html (332 bytes security) (deflated 55%) adding: html/convertToTxFeatures.html (332 bytes security) (deflated 54%) adding: html/exonCompatible.html (332 bytes security) (deflated 60%) adding: html/exportFeatures.html (332 bytes security) (deflated 50%) adding: html/filterFeatures.html (332 bytes security) (deflated 65%) adding: html/findOverlapsRanges.html (332 bytes security) (deflated 59%) adding: html/findSGVariants.html (332 bytes security) (deflated 57%) adding: html/getBamInfo.html (332 bytes security) (deflated 57%) adding: html/getSGFeatureCounts.html (332 bytes security) (deflated 57%) adding: html/getSGFeatureCountsPerSample.html (332 bytes security) (deflated 58%) adding: html/getSGVariantCounts.html (332 bytes security) (deflated 59%) adding: html/gr.html (332 bytes security) (deflated 40%) adding: html/importTranscripts.html (332 bytes security) (deflated 52%) adding: html/junctionCompatible.html (332 bytes security) (deflated 58%) adding: html/makeSGFeatureCounts.html (332 bytes security) (deflated 55%) adding: html/makeVariantNames.html (332 bytes security) (deflated 49%) adding: html/mergeTxFeatures.html (332 bytes security) (deflated 51%) adding: html/plotCoverage.html (332 bytes security) (deflated 66%) adding: html/plotFeatures.html (332 bytes security) (deflated 65%) adding: html/plotSpliceGraph.html (332 bytes security) (deflated 70%) adding: html/plotVariants.html (332 bytes security) (deflated 64%) adding: html/predictCandidatesInternal.html (332 bytes security) (deflated 57%) adding: html/predictCandidatesTerminal.html (332 bytes security) (deflated 54%) adding: html/predictExonsInternal.html (332 bytes security) (deflated 60%) adding: html/predictExonsTerminal.html (332 bytes security) (deflated 61%) adding: html/predictJunctions.html (332 bytes security) (deflated 57%) adding: html/predictSpliced.html (332 bytes security) (deflated 64%) adding: html/predictTxFeatures.html (332 bytes security) (deflated 63%) adding: html/predictTxFeaturesPerSample.html (332 bytes security) (deflated 67%) adding: html/predictTxFeaturesPerStrand.html (332 bytes security) (deflated 63%) adding: html/predictVariantEffects.html (332 bytes security) (deflated 56%) adding: html/processTerminalExons.html (332 bytes security) (deflated 59%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/removeExonsIsolated.html (332 bytes security) (deflated 50%) adding: html/sgfc_ann.html (332 bytes security) (deflated 43%) adding: html/sgfc_pred.html (332 bytes security) (deflated 43%) adding: html/SGFeatureCounts.html (332 bytes security) (deflated 49%) adding: html/SGFeatures.html (332 bytes security) (deflated 65%) adding: html/sgf_ann.html (332 bytes security) (deflated 43%) adding: html/sgf_pred.html (332 bytes security) (deflated 42%) adding: html/SGSegments.html (332 bytes security) (deflated 46%) adding: html/SGVariantCounts.html (332 bytes security) (deflated 51%) adding: html/SGVariants.html (332 bytes security) (deflated 65%) adding: html/sgvc_ann.html (332 bytes security) (deflated 43%) adding: html/sgvc_ann_from_bam.html (332 bytes security) (deflated 44%) adding: html/sgvc_pred.html (332 bytes security) (deflated 43%) adding: html/sgvc_pred_from_bam.html (332 bytes security) (deflated 46%) adding: html/sgv_ann.html (332 bytes security) (deflated 42%) adding: html/sgv_pred.html (332 bytes security) (deflated 42%) adding: html/si.html (332 bytes security) (deflated 45%) adding: html/slots.html (332 bytes security) (deflated 84%) adding: html/splicesiteOverlap.html (332 bytes security) (deflated 59%) adding: html/tx.html (332 bytes security) (deflated 41%) adding: html/TxFeatures.html (332 bytes security) (deflated 58%) adding: html/txf_ann.html (332 bytes security) (deflated 43%) adding: html/txf_pred.html (332 bytes security) (deflated 42%) adding: html/updateObject.html (332 bytes security) (deflated 50%) adding: INDEX (332 bytes security) (deflated 69%) adding: MD5 (332 bytes security) (deflated 53%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/data.rds (332 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 65%) adding: NEWS (332 bytes security) (deflated 61%) adding: R/ (372 bytes security) (stored 0%) adding: R/SGSeq (332 bytes security) (deflated 41%) adding: R/SGSeq.rdb (332 bytes security) (deflated 21%) adding: R/SGSeq.rdx (332 bytes security) (deflated 0%) adding: scripts/ (372 bytes security) (stored 0%) adding: scripts/createExampleData.R (332 bytes security) (deflated 66%) adding: unitTests/ (372 bytes security) (stored 0%) adding: unitTests/test_analyzeFeatures.R (332 bytes security) (deflated 31%) adding: unitTests/test_analyzeVariants.R (332 bytes security) (deflated 21%) adding: unitTests/test_annotate.R (332 bytes security) (deflated 49%) adding: unitTests/test_classes.R (332 bytes security) (deflated 71%) adding: unitTests/test_convertToSGFeatures.R (332 bytes security) (deflated 25%) adding: unitTests/test_convertToTxFeatures.R (332 bytes security) (deflated 42%) adding: unitTests/test_findSGVariants.R (332 bytes security) (deflated 86%) adding: unitTests/test_getBamInfo.R (332 bytes security) (deflated 37%) adding: unitTests/test_getSGFeatureCounts.R (332 bytes security) (deflated 33%) adding: unitTests/test_getSGVariantCounts.R (332 bytes security) (deflated 55%) adding: unitTests/test_mergeTxFeatures.R (332 bytes security) (deflated 36%) adding: unitTests/test_predictTxFeatures.R (332 bytes security) (deflated 30%) adding: unitTests/test_predictVariantEffects.R (332 bytes security) (deflated 72%)