Bioconductor Package Maintainer
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/Rhtslib |
| Branch: RELEASE_3_6 |
| Last Commit: 53dcf7d |
| Last Changed Date: 2017-10-30 12:40:49 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:25:48 -0400 (Thu, 12 Apr 2018).
| Package 1175/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Rhtslib 1.10.0 Bioconductor Package Maintainer
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: Rhtslib |
| Version: 1.10.0 |
| Command: rm -rf Rhtslib.buildbin-libdir && mkdir Rhtslib.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/Rhtslib_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=Rhtslib.buildbin-libdir --merge-multiarch Rhtslib_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL Rhtslib_1.10.0.zip && rm Rhtslib_1.10.0.tar.gz Rhtslib_1.10.0.zip |
| StartedAt: 2018-04-11 18:27:28 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:28:41 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 72.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf Rhtslib.buildbin-libdir && mkdir Rhtslib.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/Rhtslib_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=Rhtslib.buildbin-libdir --merge-multiarch Rhtslib_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL Rhtslib_1.10.0.zip && rm Rhtslib_1.10.0.tar.gz Rhtslib_1.10.0.zip
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install for i386
* installing *source* package 'Rhtslib' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
cp "winlib/i386/libhts.a" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhtslib.buildbin-libdir/Rhtslib/lib/i386"/libhts.a
cp ./htslib/htslib/bgzf.h ./htslib/htslib/faidx.h ./htslib/htslib/hfile.h ./htslib/htslib/hts.h ./htslib/htslib/hts_defs.h ./htslib/htslib/kfunc.h ./htslib/htslib/khash.h ./htslib/htslib/khash_str2int.h ./htslib/htslib/klist.h ./htslib/htslib/knetfile.h ./htslib/htslib/kseq.h ./htslib/htslib/ksort.h ./htslib/htslib/kstring.h ./htslib/htslib/regidx.h ./htslib/htslib/sam.h ./htslib/htslib/synced_bcf_reader.h ./htslib/htslib/tbx.h ./htslib/htslib/vcf.h ./htslib/htslib/vcf_sweep.h ./htslib/htslib/vcfutils.h ""C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhtslib.buildbin-libdir/Rhtslib/include""
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/zlibbioc/include" -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c Rhtslib.c -o Rhtslib.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o Rhtslib.dll tmp.def Rhtslib.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhtslib.buildbin-libdir/Rhtslib/libs/i386
** R
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'Rhtslib'
finding HTML links ... done
Rhtslib-package html
pkgconfig html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'Rhtslib' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
cp "winlib/x64/libhts.a" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhtslib.buildbin-libdir/Rhtslib/lib/x64"/libhts.a
cp ./htslib/htslib/bgzf.h ./htslib/htslib/faidx.h ./htslib/htslib/hfile.h ./htslib/htslib/hts.h ./htslib/htslib/hts_defs.h ./htslib/htslib/kfunc.h ./htslib/htslib/khash.h ./htslib/htslib/khash_str2int.h ./htslib/htslib/klist.h ./htslib/htslib/knetfile.h ./htslib/htslib/kseq.h ./htslib/htslib/ksort.h ./htslib/htslib/kstring.h ./htslib/htslib/regidx.h ./htslib/htslib/sam.h ./htslib/htslib/synced_bcf_reader.h ./htslib/htslib/tbx.h ./htslib/htslib/vcf.h ./htslib/htslib/vcf_sweep.h ./htslib/htslib/vcfutils.h ""C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhtslib.buildbin-libdir/Rhtslib/include""
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/zlibbioc/include" -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c Rhtslib.c -o Rhtslib.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o Rhtslib.dll tmp.def Rhtslib.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhtslib.buildbin-libdir/Rhtslib/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Rhtslib' as Rhtslib_1.10.0.zip
* DONE (Rhtslib)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'Rhtslib' successfully unpacked and MD5 sums checked
In R CMD INSTALL