Mike Smith
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/Rhdf5lib |
| Branch: RELEASE_3_6 |
| Last Commit: 7960803 |
| Last Changed Date: 2017-10-30 12:41:31 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:30:03 -0400 (Thu, 12 Apr 2018).
| Package 1174/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Rhdf5lib 1.0.0 Mike Smith
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: Rhdf5lib |
| Version: 1.0.0 |
| Command: rm -rf Rhdf5lib.buildbin-libdir && mkdir Rhdf5lib.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/Rhdf5lib_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=Rhdf5lib.buildbin-libdir --merge-multiarch Rhdf5lib_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL Rhdf5lib_1.0.0.zip && rm Rhdf5lib_1.0.0.tar.gz Rhdf5lib_1.0.0.zip |
| StartedAt: 2018-04-11 18:10:26 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:14:01 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 215.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf Rhdf5lib.buildbin-libdir && mkdir Rhdf5lib.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/Rhdf5lib_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=Rhdf5lib.buildbin-libdir --merge-multiarch Rhdf5lib_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL Rhdf5lib_1.0.0.zip && rm Rhdf5lib_1.0.0.tar.gz Rhdf5lib_1.0.0.zip
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install for i386
* installing *source* package 'Rhdf5lib' ...
untarring hdf5_headers_1.8.19.tar.gz ...
** libs
mkdir -p "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/i386/" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include/c++"
cp "winlib/i386/libhdf5.a" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/i386/libhdf5.a"
cp "winlib/i386/libhdf5_cpp.a" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/i386/libhdf5_cpp.a"
cp "winlib/i386/libszip.a" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/i386/libszip.a"
cp ./hdf5/*.h "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include"
cp ./hdf5/c++/*.h "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include/c++"
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -I./hdf5 -O3 -Wall -std=gnu99 -mtune=generic -c Rhdf5lib.c -o Rhdf5lib.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o Rhdf5lib.dll tmp.def Rhdf5lib.o winlib/i386/libhdf5.a winlib/i386/libszip.a -lpsapi -lz -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/libs/i386
** R
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'Rhdf5lib'
finding HTML links ... done
Rhdf5lib html
getHdf5Version html
pkgconfig html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'Rhdf5lib' ...
untarring hdf5_headers_1.8.19.tar.gz ...
** libs
mkdir -p "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include/c++"
cp "winlib/x64/libhdf5.a" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5.a"
cp "winlib/x64/libhdf5_cpp.a" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libhdf5_cpp.a"
cp "winlib/x64/libszip.a" "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/lib/x64/libszip.a"
cp ./hdf5/*.h "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include"
cp ./hdf5/c++/*.h "C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/include/c++"
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -I./hdf5 -O2 -Wall -std=gnu99 -mtune=generic -c Rhdf5lib.c -o Rhdf5lib.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o Rhdf5lib.dll tmp.def Rhdf5lib.o winlib/x64/libhdf5.a winlib/x64/libszip.a -lpsapi -lz -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/Rhdf5lib.buildbin-libdir/Rhdf5lib/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Rhdf5lib' as Rhdf5lib_1.0.0.zip
* DONE (Rhdf5lib)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'Rhdf5lib' successfully unpacked and MD5 sums checked
In R CMD INSTALL