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CHECK report for RankProd on tokay1

This page was generated on 2018-04-12 13:17:49 -0400 (Thu, 12 Apr 2018).

Package 1119/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RankProd 3.4.0
Francesco Del Carratore
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/RankProd
Branch: RELEASE_3_6
Last Commit: d078136
Last Changed Date: 2017-10-30 12:39:04 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RankProd
Version: 3.4.0
Command: rm -rf RankProd.buildbin-libdir RankProd.Rcheck && mkdir RankProd.buildbin-libdir RankProd.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RankProd.buildbin-libdir RankProd_3.4.0.tar.gz >RankProd.Rcheck\00install.out 2>&1 && cp RankProd.Rcheck\00install.out RankProd-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=RankProd.buildbin-libdir --install="check:RankProd-install.out" --force-multiarch --no-vignettes --timings RankProd_3.4.0.tar.gz
StartedAt: 2018-04-12 02:28:26 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 02:29:28 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 62.2 seconds
RetCode: 0
Status:  OK  
CheckDir: RankProd.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf RankProd.buildbin-libdir RankProd.Rcheck && mkdir RankProd.buildbin-libdir RankProd.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RankProd.buildbin-libdir RankProd_3.4.0.tar.gz >RankProd.Rcheck\00install.out 2>&1 && cp RankProd.Rcheck\00install.out RankProd-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=RankProd.buildbin-libdir --install="check:RankProd-install.out" --force-multiarch --no-vignettes --timings RankProd_3.4.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/RankProd.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RankProd/DESCRIPTION' ... OK
* this is package 'RankProd' version '3.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RankProd' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

RankProd.Rcheck/00install.out


install for i386

* installing *source* package 'RankProd' ...
** R
** data
** inst
** preparing package for lazy loading
[1] "this is the new version of the RankProd package"
** help
*** installing help indices
  converting help for package 'RankProd'
    finding HTML links ... done
    Apples                                  html  
    RP                                      html  
    RP.advance                              html  
    RPadvance                               html  
    RSadvance                               html  
    RankProd-internal                       html  
    RankProducts                            html  
    arab                                    html  
    golub                                   html  
    lymphoma                                html  
    plotRP                                  html  
    topGene                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'RankProd' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RankProd' as RankProd_3.4.0.zip
* DONE (RankProd)
In R CMD INSTALL
In R CMD INSTALL

Tests output


Example timings

RankProd.Rcheck/examples_i386/RankProd-Ex.timings

nameusersystemelapsed
Apples0.030.000.03
RP0.370.000.37
RP.advance2.390.002.39
RPadvance1.10.01.1
RSadvance0.810.000.81
RankProducts0.720.000.72
plotRP0.230.010.25
topGene0.610.000.61

RankProd.Rcheck/examples_x64/RankProd-Ex.timings

nameusersystemelapsed
Apples0.000.020.01
RP0.50.00.5
RP.advance3.150.033.19
RPadvance1.350.011.36
RSadvance0.850.000.86
RankProducts0.960.000.97
plotRP0.310.000.31
topGene0.720.020.73