Marcin Kosinski
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/RTCGA |
| Branch: RELEASE_3_6 |
| Last Commit: c502417 |
| Last Changed Date: 2017-10-30 12:40:54 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:26:50 -0400 (Thu, 12 Apr 2018).
| Package 1223/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RTCGA 1.8.0 Marcin Kosinski
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: RTCGA |
| Version: 1.8.0 |
| Command: rm -rf RTCGA.buildbin-libdir && mkdir RTCGA.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/RTCGA_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=RTCGA.buildbin-libdir --merge-multiarch RTCGA_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL RTCGA_1.8.0.zip && rm RTCGA_1.8.0.tar.gz RTCGA_1.8.0.zip |
| StartedAt: 2018-04-11 18:36:52 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:38:33 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 100.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf RTCGA.buildbin-libdir && mkdir RTCGA.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/RTCGA_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=RTCGA.buildbin-libdir --merge-multiarch RTCGA_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL RTCGA_1.8.0.zip && rm RTCGA_1.8.0.tar.gz RTCGA_1.8.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
97 2440k 97 2384k 0 0 14.3M 0 --:--:-- --:--:-- --:--:-- 14.5M
100 2440k 100 2440k 0 0 14.6M 0 --:--:-- --:--:-- --:--:-- 14.8M
install for i386
* installing *source* package 'RTCGA' ...
** R
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'RTCGA'
finding HTML links ... done
RTCGA-package html
boxplotTCGA html
finding level-2 HTML links ... done
checkTCGA html
convertTCGA html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpkJDTc1/R.INSTALL159022914c/RTCGA/man/convertTCGA.Rd:23: missing file link 'ExpressionSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpkJDTc1/R.INSTALL159022914c/RTCGA/man/convertTCGA.Rd:23: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpkJDTc1/R.INSTALL159022914c/RTCGA/man/convertTCGA.Rd:13: missing file link 'ExpressionSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpkJDTc1/R.INSTALL159022914c/RTCGA/man/convertTCGA.Rd:13: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpkJDTc1/R.INSTALL159022914c/RTCGA/man/convertTCGA.Rd:18: missing file link 'ExpressionSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpkJDTc1/R.INSTALL159022914c/RTCGA/man/convertTCGA.Rd:18: missing file link 'GRanges'
datasetsTCGA html
downloadTCGA html
expressionsTCGA html
heatmapTCGA html
infoTCGA html
installTCGA html
kmTCGA html
mutationsTCGA html
pcaTCGA html
readTCGA html
survivalTCGA html
theme_RTCGA html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'RTCGA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RTCGA' as RTCGA_1.8.0.zip
* DONE (RTCGA)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'RTCGA' successfully unpacked and MD5 sums checked
In R CMD INSTALL