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BUILD BIN report for R453Plus1Toolbox on tokay1

This page was generated on 2018-04-12 13:20:29 -0400 (Thu, 12 Apr 2018).

Package 1111/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
R453Plus1Toolbox 1.28.1
Hans-Ulrich Klein
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/R453Plus1Toolbox
Branch: RELEASE_3_6
Last Commit: 5939f48
Last Changed Date: 2017-12-13 20:55:16 -0400 (Wed, 13 Dec 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: R453Plus1Toolbox
Version: 1.28.1
Command: cd R453Plus1Toolbox.buildbin-libdir/R453Plus1Toolbox && zip -r ../../R453Plus1Toolbox_1.28.1.zip . & cd ../..
StartedAt: 2018-04-12 04:58:45 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 04:59:15 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 30.3 seconds
RetCode: 0
Status:  OK  
PackageFile: R453Plus1Toolbox_1.28.1.zip
PackageFileSize: 3.077 MiB

Command output

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###
### Running command:
###
###   cd R453Plus1Toolbox.buildbin-libdir/R453Plus1Toolbox && zip -r ../../R453Plus1Toolbox_1.28.1.zip . & cd ../..
###
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  adding: CITATION (332 bytes security) (deflated 40%)
  adding: data/ (372 bytes security) (stored 0%)
  adding: data/avaSetExample.RData (332 bytes security) (deflated 3%)
  adding: data/avaSetFiltered.RData (332 bytes security) (deflated 3%)
  adding: data/avaSetFiltered_annot.RData (332 bytes security) (stored 0%)
  adding: data/breakpoints.RData (332 bytes security) (stored 0%)
  adding: data/captureArray.RData (332 bytes security) (stored 0%)
  adding: data/mapperSetExample.RData (332 bytes security) (deflated 1%)
  adding: data/plotVariantsExample.RData (332 bytes security) (stored 0%)
  adding: DESCRIPTION (332 bytes security) (deflated 43%)
  adding: doc/ (372 bytes security) (stored 0%)
  adding: doc/index.html (332 bytes security) (deflated 58%)
  adding: doc/vignette.pdf (332 bytes security) (deflated 20%)
  adding: doc/vignette.R (332 bytes security) (deflated 82%)
  adding: doc/vignette.Rnw (332 bytes security) (deflated 71%)
  adding: extdata/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/ProjectDef/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/ProjectDef/ampliconsProject.txt (332 bytes security) (deflated 73%)
  adding: extdata/AVASet/Amplicons/Results/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I116/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I116/I36/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I116/I36/I116_vs_I36.ampIds.txt (332 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I116/I37/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I116/I37/I116_vs_I37.ampIds.txt (332 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I116/I40/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I116/I40/I116_vs_I40.ampIds.txt (332 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I116/I42/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I116/I42/I116_vs_I42.ampIds.txt (332 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I117/ (372 bytes security) (stored 0%)
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  adding: extdata/AVASet/Amplicons/Results/Align/I117/I37/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I117/I37/I117_vs_I37.ampIds.txt (332 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I117/I40/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I117/I40/I117_vs_I40.ampIds.txt (332 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I117/I42/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I117/I42/I117_vs_I42.ampIds.txt (332 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I118/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I118/I36/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I118/I36/I118_vs_I36.ampIds.txt (332 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I118/I37/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I118/I37/I118_vs_I37.ampIds.txt (332 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I118/I40/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I118/I40/I118_vs_I40.ampIds.txt (332 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I118/I42/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I118/I42/I118_vs_I42.ampIds.txt (332 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9644/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9644/I36/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9644/I36/I9644_vs_I36.ampIds.txt (332 bytes security) (deflated 6%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9644/I37/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9644/I37/I9644_vs_I37.ampIds.txt (332 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9644/I40/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9644/I40/I9644_vs_I40.ampIds.txt (332 bytes security) (deflated 6%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9644/I42/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9644/I42/I9644_vs_I42.ampIds.txt (332 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9645/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9645/I36/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9645/I36/I9645_vs_I36.ampIds.txt (332 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9645/I37/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9645/I37/I9645_vs_I37.ampIds.txt (332 bytes security) (deflated 6%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9645/I40/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9645/I40/I9645_vs_I40.ampIds.txt (332 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9645/I42/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9645/I42/I9645_vs_I42.ampIds.txt (332 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9646/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9646/I36/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9646/I36/I9646_vs_I36.ampIds.txt (332 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9646/I37/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9646/I37/I9646_vs_I37.ampIds.txt (332 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9646/I37/I9646_vs_I37.readAlign.txt (332 bytes security) (deflated 97%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9646/I40/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9646/I40/I9646_vs_I40.ampIds.txt (332 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9646/I42/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9646/I42/I9646_vs_I42.ampIds.txt (332 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Variants/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Variants/currentVariantDefs.txt (332 bytes security) (deflated 77%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I116/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I116/I116xI36detectedVariants.txt (332 bytes security) (deflated 83%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I116/I116xI37detectedVariants.txt (332 bytes security) (deflated 83%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I116/I116xI40detectedVariants.txt (332 bytes security) (deflated 83%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I116/I116xI42detectedVariants.txt (332 bytes security) (deflated 83%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I117/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I117/I117xI36detectedVariants.txt (332 bytes security) (deflated 84%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I117/I117xI37detectedVariants.txt (332 bytes security) (deflated 83%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I117/I117xI40detectedVariants.txt (332 bytes security) (deflated 83%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I117/I117xI42detectedVariants.txt (332 bytes security) (deflated 82%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I118/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I118/I118xI36detectedVariants.txt (332 bytes security) (deflated 83%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I118/I118xI37detectedVariants.txt (332 bytes security) (deflated 83%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I118/I118xI40detectedVariants.txt (332 bytes security) (deflated 82%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I118/I118xI42detectedVariants.txt (332 bytes security) (deflated 82%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9644/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9644/I9644xI36detectedVariants.txt (332 bytes security) (deflated 86%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9644/I9644xI37detectedVariants.txt (332 bytes security) (deflated 85%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9644/I9644xI40detectedVariants.txt (332 bytes security) (deflated 85%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9644/I9644xI42detectedVariants.txt (332 bytes security) (deflated 85%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9645/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9645/I9645xI36detectedVariants.txt (332 bytes security) (deflated 85%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9645/I9645xI37detectedVariants.txt (332 bytes security) (deflated 85%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9645/I9645xI40detectedVariants.txt (332 bytes security) (deflated 85%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9645/I9645xI42detectedVariants.txt (332 bytes security) (deflated 85%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9646/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9646/I9646xI36detectedVariants.txt (332 bytes security) (deflated 86%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9646/I9646xI37detectedVariants.txt (332 bytes security) (deflated 85%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9646/I9646xI40detectedVariants.txt (332 bytes security) (deflated 85%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9646/I9646xI42detectedVariants.txt (332 bytes security) (deflated 85%)
  adding: extdata/AVASet_doAmplicon/ (372 bytes security) (stored 0%)
  adding: extdata/AVASet_doAmplicon/amp.csv (332 bytes security) (deflated 42%)
  adding: extdata/AVASet_doAmplicon/reference.csv (332 bytes security) (deflated 63%)
  adding: extdata/AVASet_doAmplicon/sample.csv (332 bytes security) (deflated 58%)
  adding: extdata/AVASet_doAmplicon/variant.csv (332 bytes security) (deflated 82%)
  adding: extdata/AVASet_doAmplicon/variantHits.csv (332 bytes security) (deflated 92%)
  adding: extdata/AVAVarFreqExport/ (372 bytes security) (stored 0%)
  adding: extdata/AVAVarFreqExport/AVAVarFreqExport.xls (332 bytes security) (deflated 81%)
  adding: extdata/MapperSet/ (372 bytes security) (stored 0%)
  adding: extdata/MapperSet/N01/ (372 bytes security) (stored 0%)
  adding: extdata/MapperSet/N01/mapping/ (372 bytes security) (stored 0%)
  adding: extdata/MapperSet/N01/mapping/454HCDiffs.txt (332 bytes security) (deflated 85%)
  adding: extdata/MapperSet/N01/mapping/454NewblerMetrics.txt (332 bytes security) (deflated 77%)
  adding: extdata/MapperSet/N03/ (372 bytes security) (stored 0%)
  adding: extdata/MapperSet/N03/mapping/ (372 bytes security) (stored 0%)
  adding: extdata/MapperSet/N03/mapping/454HCDiffs.txt (332 bytes security) (deflated 85%)
  adding: extdata/MapperSet/N03/mapping/454NewblerMetrics.txt (332 bytes security) (deflated 77%)
  adding: extdata/MapperSet/N04/ (372 bytes security) (stored 0%)
  adding: extdata/MapperSet/N04/mapping/ (372 bytes security) (stored 0%)
  adding: extdata/MapperSet/N04/mapping/454HCDiffs.txt (332 bytes security) (deflated 85%)
  adding: extdata/MapperSet/N04/mapping/454NewblerMetrics.txt (332 bytes security) (deflated 77%)
  adding: extdata/qualityReport.Rnw (332 bytes security) (deflated 79%)
  adding: extdata/SFF/ (372 bytes security) (stored 0%)
  adding: extdata/SFF/example.sff (332 bytes security) (deflated 70%)
  adding: extdata/SVDetection/ (372 bytes security) (stored 0%)
  adding: extdata/SVDetection/bam/ (372 bytes security) (stored 0%)
  adding: extdata/SVDetection/bam/N01.bam (332 bytes security) (deflated 0%)
  adding: extdata/SVDetection/chip/ (372 bytes security) (stored 0%)
  adding: extdata/SVDetection/chip/CaptureArray_hg19.bed (332 bytes security) (deflated 67%)
  adding: extdata/SVDetection/R_2009_07_30/ (372 bytes security) (stored 0%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/ (372 bytes security) (stored 0%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/1.CAT.454Reads.fna (332 bytes security) (deflated 69%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/1.CAT.454Reads.qual (332 bytes security) (deflated 82%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/1.TCA.454Reads.fna (332 bytes security) (deflated 69%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/1.TCA.454Reads.qual (332 bytes security) (deflated 83%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/2.CAT.454Reads.fna (332 bytes security) (deflated 69%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/2.CAT.454Reads.qual (332 bytes security) (deflated 81%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/2.TCA.454Reads.fna (332 bytes security) (deflated 69%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/2.TCA.454Reads.qual (332 bytes security) (deflated 82%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/454BaseCallerMetrics.csv (332 bytes security) (deflated 53%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/454BaseCallerMetrics.txt (332 bytes security) (deflated 82%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/454DataProcessingDir.xml (332 bytes security) (deflated 35%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/454QualityFilterMetrics.csv (332 bytes security) (deflated 58%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/454QualityFilterMetrics.txt (332 bytes security) (deflated 71%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/454RuntimeMetricsAll.csv (332 bytes security) (deflated 69%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/454RuntimeMetricsAll.txt (332 bytes security) (deflated 81%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/dataRunParams.xml (332 bytes security) (deflated 81%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/gsRunProcessor.log (332 bytes security) (deflated 89%)
  adding: help/ (372 bytes security) (stored 0%)
  adding: help/aliases.rds (332 bytes security) (stored 0%)
  adding: help/AnIndex (332 bytes security) (deflated 87%)
  adding: help/paths.rds (332 bytes security) (stored 0%)
  adding: help/R453Plus1Toolbox.rdb (332 bytes security) (deflated 1%)
  adding: help/R453Plus1Toolbox.rdx (332 bytes security) (stored 0%)
  adding: html/ (372 bytes security) (stored 0%)
  adding: html/00Index.html (332 bytes security) (deflated 89%)
  adding: html/alignShortReads.html (332 bytes security) (deflated 57%)
  adding: html/AnnotatedVariants-class.html (332 bytes security) (deflated 58%)
  adding: html/annotateVariants.html (332 bytes security) (deflated 61%)
  adding: html/assayDataAmp.html (332 bytes security) (deflated 54%)
  adding: html/ava2vcf.html (332 bytes security) (deflated 59%)
  adding: html/AVASet-class.html (332 bytes security) (deflated 69%)
  adding: html/AVASet.html (332 bytes security) (deflated 65%)
  adding: html/avaSetExample.html (332 bytes security) (deflated 44%)
  adding: html/avaSetFiltered.html (332 bytes security) (deflated 46%)
  adding: html/avaSetFiltered_annot.html (332 bytes security) (deflated 45%)
  adding: html/baseFrequency.html (332 bytes security) (deflated 53%)
  adding: html/baseQualityHist.html (332 bytes security) (deflated 56%)
  adding: html/baseQualityStats.html (332 bytes security) (deflated 48%)
  adding: html/Breakpoints-class.html (332 bytes security) (deflated 79%)
  adding: html/breakpoints.html (332 bytes security) (deflated 47%)
  adding: html/calculateTiTv.html (332 bytes security) (deflated 49%)
  adding: html/captureArray.html (332 bytes security) (deflated 44%)
  adding: html/complexity.dust.html (332 bytes security) (deflated 56%)
  adding: html/complexity.entropy.html (332 bytes security) (deflated 58%)
  adding: html/convertCigar.html (332 bytes security) (deflated 49%)
  adding: html/coverageOnTarget.html (332 bytes security) (deflated 53%)
  adding: html/demultiplexReads.html (332 bytes security) (deflated 58%)
  adding: html/detectBreakpoints.html (332 bytes security) (deflated 66%)
  adding: html/dinucleotideOddsRatio.html (332 bytes security) (deflated 55%)
  adding: html/fDataAmp.html (332 bytes security) (deflated 54%)
  adding: html/featureDataAmp.html (332 bytes security) (deflated 55%)
  adding: html/filterChimericReads.html (332 bytes security) (deflated 60%)
  adding: html/flowgramBarplot.html (332 bytes security) (deflated 55%)
  adding: html/gcContent.html (332 bytes security) (deflated 50%)
  adding: html/gcContentHist.html (332 bytes security) (deflated 56%)
  adding: html/gcPerPosition.html (332 bytes security) (deflated 56%)
  adding: html/genomeSequencerMIDs.html (332 bytes security) (deflated 53%)
  adding: html/getAlignedReads.html (332 bytes security) (deflated 56%)
  adding: html/getAminoAbbr.html (332 bytes security) (deflated 43%)
  adding: html/getVariantPercentages.html (332 bytes security) (deflated 60%)
  adding: html/homopolymerHist.html (332 bytes security) (deflated 55%)
  adding: html/htmlReport.html (332 bytes security) (deflated 63%)
  adding: html/MapperSet-class.html (332 bytes security) (deflated 67%)
  adding: html/MapperSet.html (332 bytes security) (deflated 56%)
  adding: html/mapperSetExample.html (332 bytes security) (deflated 46%)
  adding: html/mergeBreakpoints.html (332 bytes security) (deflated 61%)
  adding: html/mutationInfo.html (332 bytes security) (deflated 50%)
  adding: html/nucleotideCharts.html (332 bytes security) (deflated 57%)
  adding: html/plotAmpliconCoverage.html (332 bytes security) (deflated 60%)
  adding: html/plotChimericReads.html (332 bytes security) (deflated 62%)
  adding: html/plotVariants.html (332 bytes security) (deflated 64%)
  adding: html/plotVariationFrequency.html (332 bytes security) (deflated 55%)
  adding: html/positionQualityBoxplot.html (332 bytes security) (deflated 57%)
  adding: html/qualityReportSFF.html (332 bytes security) (deflated 60%)
  adding: html/R.css (332 bytes security) (deflated 75%)
  adding: html/readLengthHist.html (332 bytes security) (deflated 57%)
  adding: html/readLengthStats.html (332 bytes security) (deflated 49%)
  adding: html/readSFF.html (332 bytes security) (deflated 52%)
  adding: html/readsOnTarget.html (332 bytes security) (deflated 52%)
  adding: html/referenceSequences.html (332 bytes security) (deflated 53%)
  adding: html/regions.html (332 bytes security) (deflated 49%)
  adding: html/removeLinker.html (332 bytes security) (deflated 59%)
  adding: html/sequenceCaptureLinkers.html (332 bytes security) (deflated 54%)
  adding: html/sequenceQualityHist.html (332 bytes security) (deflated 55%)
  adding: html/setVariantFilter.html (332 bytes security) (deflated 60%)
  adding: html/sff2fastq.html (332 bytes security) (deflated 53%)
  adding: html/SFFContainer-class.html (332 bytes security) (deflated 79%)
  adding: html/SFFRead-class.html (332 bytes security) (deflated 79%)
  adding: html/variants.html (332 bytes security) (deflated 49%)
  adding: html/writeSFF.html (332 bytes security) (deflated 54%)
  adding: INDEX (332 bytes security) (deflated 66%)
  adding: javascript/ (372 bytes security) (stored 0%)
  adding: javascript/sorttable.js (332 bytes security) (deflated 70%)
  adding: libs/ (372 bytes security) (stored 0%)
  adding: libs/i386/ (372 bytes security) (stored 0%)
  adding: libs/i386/R453Plus1Toolbox.dll (332 bytes security) (deflated 57%)
  adding: libs/x64/ (372 bytes security) (stored 0%)
  adding: libs/x64/R453Plus1Toolbox.dll (332 bytes security) (deflated 59%)
  adding: MD5 (332 bytes security) (deflated 62%)
  adding: Meta/ (372 bytes security) (stored 0%)
  adding: Meta/data.rds (332 bytes security) (stored 0%)
  adding: Meta/features.rds (332 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (332 bytes security) (deflated 0%)
  adding: Meta/links.rds (332 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (332 bytes security) (stored 0%)
  adding: Meta/package.rds (332 bytes security) (stored 0%)
  adding: Meta/Rd.rds (332 bytes security) (stored 0%)
  adding: Meta/vignette.rds (332 bytes security) (stored 0%)
  adding: NAMESPACE (332 bytes security) (deflated 65%)
  adding: NEWS.Rd (332 bytes security) (deflated 57%)
  adding: R/ (372 bytes security) (stored 0%)
  adding: R/R453Plus1Toolbox (332 bytes security) (deflated 41%)
  adding: R/R453Plus1Toolbox.rdb (332 bytes security) (deflated 40%)
  adding: R/R453Plus1Toolbox.rdx (332 bytes security) (deflated 5%)