Yu Zhang
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/QUBIC |
| Branch: RELEASE_3_6 |
| Last Commit: 0889d0c |
| Last Changed Date: 2018-02-08 06:21:11 -0400 (Thu, 08 Feb 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:27:51 -0400 (Thu, 12 Apr 2018).
| Package 1106/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| QUBIC 1.6.4 Yu Zhang
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: QUBIC |
| Version: 1.6.4 |
| Command: rm -rf QUBIC.buildbin-libdir && mkdir QUBIC.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/QUBIC_1.6.4.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=QUBIC.buildbin-libdir --merge-multiarch QUBIC_1.6.4.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL QUBIC_1.6.4.zip && rm QUBIC_1.6.4.tar.gz QUBIC_1.6.4.zip |
| StartedAt: 2018-04-11 18:17:37 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:23:36 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 359.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf QUBIC.buildbin-libdir && mkdir QUBIC.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/QUBIC_1.6.4.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=QUBIC.buildbin-libdir --merge-multiarch QUBIC_1.6.4.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL QUBIC_1.6.4.zip && rm QUBIC_1.6.4.tar.gz QUBIC_1.6.4.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
36 44552 36 16384 0 0 10404 0 0:00:04 0:00:01 0:00:03 10422
100 44552 100 44552 0 0 28287 0 0:00:01 0:00:01 --:--:-- 28322
install for i386
* installing *source* package 'QUBIC' ...
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -fopenmp -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -fopenmp -O2 -Wall -mtune=generic -c charset.cc -o charset.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -fopenmp -O2 -Wall -mtune=generic -c cluster.cc -o cluster.o
cluster.cc: In function 'bool internal::check_seed(const Edge*, const std::vector<Block>&, std::size_t)':
cluster.cc:132:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
return e->score >= b3;
^
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -fopenmp -O2 -Wall -mtune=generic -c discretize.cc -o discretize.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -fopenmp -O2 -Wall -mtune=generic -c edge_list.cc -o edge_list.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c fib.c -o fib.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -fopenmp -O2 -Wall -mtune=generic -c fopen_matrix.cc -o fopen_matrix.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -fopenmp -O2 -Wall -mtune=generic -c qubic.cc -o qubic.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -fopenmp -O2 -Wall -mtune=generic -c rcpp_qubic.cpp -o rcpp_qubic.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -fopenmp -O2 -Wall -mtune=generic -c struct.cc -o struct.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o QUBIC.dll tmp.def RcppExports.o charset.o cluster.o discretize.o edge_list.o fib.o fopen_matrix.o qubic.o rcpp_qubic.o struct.o -fopenmp -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/QUBIC.buildbin-libdir/QUBIC/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'QUBIC'
finding HTML links ... done
BCQU-class html
finding level-2 HTML links ... done
QUBIC html
qudiscretize html
quheatmap html
qunet2xml html
qunetwork html
showinfo html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'QUBIC' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -fopenmp -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -fopenmp -O2 -Wall -mtune=generic -c charset.cc -o charset.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -fopenmp -O2 -Wall -mtune=generic -c cluster.cc -o cluster.o
cluster.cc: In function 'bool internal::check_seed(const Edge*, const std::vector<Block>&, std::size_t)':
cluster.cc:132:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
return e->score >= b3;
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -fopenmp -O2 -Wall -mtune=generic -c discretize.cc -o discretize.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -fopenmp -O2 -Wall -mtune=generic -c edge_list.cc -o edge_list.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c fib.c -o fib.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -fopenmp -O2 -Wall -mtune=generic -c fopen_matrix.cc -o fopen_matrix.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -fopenmp -O2 -Wall -mtune=generic -c qubic.cc -o qubic.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -fopenmp -O2 -Wall -mtune=generic -c rcpp_qubic.cpp -o rcpp_qubic.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/RcppArmadillo/include" -I"C:/local323/include" -fopenmp -O2 -Wall -mtune=generic -c struct.cc -o struct.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o QUBIC.dll tmp.def RcppExports.o charset.o cluster.o discretize.o edge_list.o fib.o fopen_matrix.o qubic.o rcpp_qubic.o struct.o -fopenmp -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/QUBIC.buildbin-libdir/QUBIC/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'QUBIC' as QUBIC_1.6.4.zip
* DONE (QUBIC)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'QUBIC' successfully unpacked and MD5 sums checked
In R CMD INSTALL