Renan Sauteraud
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/Pviz |
| Branch: RELEASE_3_6 |
| Last Commit: ae0b968 |
| Last Changed Date: 2017-10-30 12:40:18 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:24:31 -0400 (Thu, 12 Apr 2018).
| Package 1091/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Pviz 1.12.0 Renan Sauteraud
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: Pviz |
| Version: 1.12.0 |
| Command: rm -rf Pviz.buildbin-libdir Pviz.Rcheck && mkdir Pviz.buildbin-libdir Pviz.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Pviz.buildbin-libdir Pviz_1.12.0.tar.gz >Pviz.Rcheck\00install.out 2>&1 && cp Pviz.Rcheck\00install.out Pviz-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=Pviz.buildbin-libdir --install="check:Pviz-install.out" --force-multiarch --no-vignettes --timings Pviz_1.12.0.tar.gz |
| StartedAt: 2018-04-12 02:20:45 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 02:26:36 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 350.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Pviz.Rcheck |
| Warnings: 0 |
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### Running command:
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### rm -rf Pviz.buildbin-libdir Pviz.Rcheck && mkdir Pviz.buildbin-libdir Pviz.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Pviz.buildbin-libdir Pviz_1.12.0.tar.gz >Pviz.Rcheck\00install.out 2>&1 && cp Pviz.Rcheck\00install.out Pviz-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=Pviz.buildbin-libdir --install="check:Pviz-install.out" --force-multiarch --no-vignettes --timings Pviz_1.12.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/Pviz.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Pviz/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Pviz' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Pviz' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.makeParMapping: no visible global function definition for
'assignInNamespace'
drawGD,ProbeTrack: no visible global function definition for
'pushViewport'
drawGD,ProbeTrack: no visible global function definition for 'viewport'
drawGD,ProbeTrack: no visible global function definition for
'popViewport'
drawGD,ProbeTrack: no visible global function definition for 'unit'
drawGD,ProbeTrack: no visible global function definition for 'gpar'
drawGD,ProbeTrack: no visible global function definition for
'convertWidth'
drawGD,ProbeTrack: no visible global function definition for
'stringWidth'
drawGD,ProbeTrack: no visible global function definition for
'stringHeight'
drawGD,ProbeTrack: no visible global function definition for
'grid.text'
drawGD,ProbeTrack: no visible global function definition for
'grid.rect'
drawGD,ProbeTrack: no visible global function definition for
'dataViewport'
drawGD,ProbeTrack : <anonymous>: no visible global function definition
for 'grid.rect'
drawGD,ProbeTrack : <anonymous>: no visible global function definition
for 'gpar'
drawGD,ProbeTrack : <anonymous>: no visible global function definition
for 'grid.text'
drawGD,ProteinAxisTrack: no visible global function definition for
'pushViewport'
drawGD,ProteinAxisTrack: no visible global function definition for
'dataViewport'
drawGD,ProteinAxisTrack: no visible global function definition for
'convertHeight'
drawGD,ProteinAxisTrack: no visible global function definition for
'stringHeight'
drawGD,ProteinAxisTrack: no visible global function definition for
'popViewport'
drawGD,ProteinAxisTrack: no visible global function definition for
'.getGapPos'
drawGD,ProteinAxisTrack: no visible global function definition for
'gaps'
drawGD,ProteinAxisTrack: no visible global function definition for
'viewport'
drawGD,ProteinAxisTrack: no visible global function definition for
'grid.segments'
drawGD,ProteinAxisTrack: no visible global function definition for
'gpar'
drawGD,ProteinAxisTrack: no visible global function definition for
'coord2ext'
drawGD,ProteinAxisTrack: no visible global function definition for
'grid.text'
drawGD,ProteinAxisTrack: no visible global function definition for
'convertWidth'
drawGD,ProteinAxisTrack: no visible global function definition for
'stringWidth'
drawGD,ProteinSequenceTrack: no visible global function definition for
'pushViewport'
drawGD,ProteinSequenceTrack: no visible global function definition for
'dataViewport'
drawGD,ProteinSequenceTrack: no visible global function definition for
'gpar'
drawGD,ProteinSequenceTrack: no visible global function definition for
'popViewport'
drawGD,ProteinSequenceTrack: no visible global function definition for
'convertUnit'
drawGD,ProteinSequenceTrack: no visible global function definition for
'stringWidth'
drawGD,ProteinSequenceTrack: no visible global function definition for
'grid.lines'
drawGD,ProteinSequenceTrack: no visible global function definition for
'unit'
drawGD,ProteinSequenceTrack: no visible global function definition for
'grid.text'
drawGD,ProteinSequenceTrack: no visible global function definition for
'grid.rect'
Undefined global functions or variables:
.getGapPos assignInNamespace convertHeight convertUnit convertWidth
coord2ext dataViewport gaps gpar grid.lines grid.rect grid.segments
grid.text popViewport pushViewport stringHeight stringWidth unit
viewport
Consider adding
importFrom("utils", "assignInNamespace")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
ProbeTrack 5.23 0.03 5.27
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.6-bioc/meat/Pviz.Rcheck/00check.log'
for details.
Pviz.Rcheck/00install.out
install for i386
* installing *source* package 'Pviz' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'Pviz'
finding HTML links ... done
ATrack html
finding level-2 HTML links ... done
CladeTrack html
DTrack html
ProbeTrack html
ProteinAxisTrack html
ProteinSequenceTrack html
plot_clade html
plot_inter html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'Pviz' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Pviz' as Pviz_1.12.0.zip
* DONE (Pviz)
In R CMD INSTALL
In R CMD INSTALL
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Pviz.Rcheck/examples_i386/Pviz-Ex.timings
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Pviz.Rcheck/examples_x64/Pviz-Ex.timings
|