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CHECK report for PROcess on veracruz1

This page was generated on 2018-04-12 13:31:19 -0400 (Thu, 12 Apr 2018).

Package 1066/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PROcess 1.54.0
Xiaochun Li
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/PROcess
Branch: RELEASE_3_6
Last Commit: e4ad9e1
Last Changed Date: 2017-10-30 12:39:01 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository

Summary

Package: PROcess
Version: 1.54.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings PROcess_1.54.0.tar.gz
StartedAt: 2018-04-12 07:52:12 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 07:53:10 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 57.2 seconds
RetCode: 0
Status:  OK 
CheckDir: PROcess.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings PROcess_1.54.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/PROcess.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PROcess/DESCRIPTION’ ... OK
* this is package ‘PROcess’ version ‘1.54.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PROcess’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘Icens’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gelmap: warning in axis(1, at = at.mz, lab = at.mz, las = 2, lty = 0,
  cex.axis = 0.8): partial argument match of 'lab' to 'labels'
gelmap: warning in axis(2, at = at.col, lab = sampLab[at.col], las = 2,
  lty = 0, cex.axis = cexCol): partial argument match of 'lab' to
  'labels'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.6-bioc/meat/PROcess.Rcheck/00check.log’
for details.



Installation output

PROcess.Rcheck/00install.out

* installing *source* package ‘PROcess’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (PROcess)

Tests output


Example timings

PROcess.Rcheck/PROcess-Ex.timings

nameusersystemelapsed
aveSpec0.3000.0100.312
bslnoff0.5020.0060.521
getPeaks3.3850.0623.497
intg0.0010.0000.001
is.multiple0.0020.0000.002
isPeak2.0150.0412.145
peaks0.0410.0010.043
pk2bmkr2.7360.0382.832
quality4.0760.0814.220
renorm0.6970.0040.704
rmBaseline0.6440.0090.659
specZoom1.9850.0432.053