Francis Blokzijl
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/MutationalPatterns |
| Branch: RELEASE_3_6 |
| Last Commit: 0427b4c |
| Last Changed Date: 2018-03-16 10:25:01 -0400 (Fri, 16 Mar 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:28:56 -0400 (Thu, 12 Apr 2018).
| Package 918/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MutationalPatterns 1.4.3 Francis Blokzijl
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: MutationalPatterns |
| Version: 1.4.3 |
| Command: cd MutationalPatterns.buildbin-libdir/MutationalPatterns && zip -r ../../MutationalPatterns_1.4.3.zip . & cd ../.. |
| StartedAt: 2018-04-12 04:53:24 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 04:53:59 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 35.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: MutationalPatterns_1.4.3.zip |
| PackageFileSize: 5.771 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd MutationalPatterns.buildbin-libdir/MutationalPatterns && zip -r ../../MutationalPatterns_1.4.3.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: CITATION (332 bytes security) (deflated 55%) adding: DESCRIPTION (332 bytes security) (deflated 45%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/index.html (332 bytes security) (deflated 63%) adding: doc/Introduction_to_MutationalPatterns.pdf (332 bytes security) (deflated 29%) adding: doc/Introduction_to_MutationalPatterns.R (332 bytes security) (deflated 85%) adding: doc/Introduction_to_MutationalPatterns.Rnw (332 bytes security) (deflated 73%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/callableloci-sample.bed (332 bytes security) (deflated 64%) adding: extdata/colon1-sample.vcf (332 bytes security) (deflated 77%) adding: extdata/colon2-sample.vcf (332 bytes security) (deflated 78%) adding: extdata/colon3-sample.vcf (332 bytes security) (deflated 79%) adding: extdata/intestine1-sample.vcf (332 bytes security) (deflated 77%) adding: extdata/intestine2-sample.vcf (332 bytes security) (deflated 79%) adding: extdata/intestine3-sample.vcf (332 bytes security) (deflated 79%) adding: extdata/liver1-sample.vcf (332 bytes security) (deflated 75%) adding: extdata/liver2-sample.vcf (332 bytes security) (deflated 79%) adding: extdata/liver3-sample.vcf (332 bytes security) (deflated 76%) adding: extdata/ReplicationDirectionRegions.bed (332 bytes security) (deflated 77%) adding: extdata/signatures_probabilities.txt (332 bytes security) (deflated 69%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 72%) adding: help/MutationalPatterns.rdb (332 bytes security) (deflated 2%) adding: help/MutationalPatterns.rdx (332 bytes security) (stored 0%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 77%) adding: html/binomial_test.html (332 bytes security) (deflated 52%) adding: html/cluster_signatures.html (332 bytes security) (deflated 58%) adding: html/cos_sim.html (332 bytes security) (deflated 50%) adding: html/cos_sim_matrix.html (332 bytes security) (deflated 60%) adding: html/enrichment_depletion_test.html (332 bytes security) (deflated 56%) adding: html/explained_by_signatures.html (332 bytes security) (deflated 60%) adding: html/extract_signatures.html (332 bytes security) (deflated 55%) adding: html/fit_to_signatures.html (332 bytes security) (deflated 58%) adding: html/genomic_distribution.html (332 bytes security) (deflated 72%) adding: html/MutationalPatterns-package.html (332 bytes security) (deflated 53%) adding: html/mutations_from_vcf.html (332 bytes security) (deflated 50%) adding: html/mutation_context.html (332 bytes security) (deflated 53%) adding: html/mutation_types.html (332 bytes security) (deflated 52%) adding: html/mut_context.html (332 bytes security) (deflated 52%) adding: html/mut_matrix.html (332 bytes security) (deflated 53%) adding: html/mut_matrix_stranded.html (332 bytes security) (deflated 62%) adding: html/mut_strand.html (332 bytes security) (deflated 63%) adding: html/mut_type.html (332 bytes security) (deflated 51%) adding: html/mut_type_occurrences.html (332 bytes security) (deflated 54%) adding: html/plot_192_profile.html (332 bytes security) (deflated 59%) adding: html/plot_96_profile.html (332 bytes security) (deflated 55%) adding: html/plot_compare_profiles.html (332 bytes security) (deflated 61%) adding: html/plot_contribution.html (332 bytes security) (deflated 65%) adding: html/plot_contribution_heatmap.html (332 bytes security) (deflated 64%) adding: html/plot_cosine_heatmap.html (332 bytes security) (deflated 62%) adding: html/plot_enrichment_depletion.html (332 bytes security) (deflated 58%) adding: html/plot_rainfall.html (332 bytes security) (deflated 60%) adding: html/plot_signature_strand_bias.html (332 bytes security) (deflated 56%) adding: html/plot_spectrum.html (332 bytes security) (deflated 61%) adding: html/plot_strand.html (332 bytes security) (deflated 58%) adding: html/plot_strand_bias.html (332 bytes security) (deflated 58%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/read_vcfs_as_granges.html (332 bytes security) (deflated 57%) adding: html/strand_bias_test.html (332 bytes security) (deflated 55%) adding: html/strand_from_vcf.html (332 bytes security) (deflated 52%) adding: html/strand_occurrences.html (332 bytes security) (deflated 57%) adding: html/type_context.html (332 bytes security) (deflated 52%) adding: INDEX (332 bytes security) (deflated 72%) adding: LICENSE (332 bytes security) (deflated 42%) adding: MD5 (332 bytes security) (deflated 51%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 69%) adding: NEWS (332 bytes security) (deflated 70%) adding: R/ (372 bytes security) (stored 0%) adding: R/MutationalPatterns (332 bytes security) (deflated 41%) adding: R/MutationalPatterns.rdb (332 bytes security) (deflated 2%) adding: R/MutationalPatterns.rdx (332 bytes security) (stored 0%) adding: states/ (372 bytes security) (stored 0%) adding: states/CTCF_g_data.rds (332 bytes security) (deflated 0%) adding: states/distr_data.rds (332 bytes security) (stored 0%) adding: states/genes_hg19.rds (332 bytes security) (deflated 1%) adding: states/mut_mat_data.rds (332 bytes security) (deflated 5%) adding: states/mut_mat_s_data.rds (332 bytes security) (deflated 10%) adding: states/nmf_res_data.rds (332 bytes security) (stored 0%) adding: states/nmf_res_strand_data.rds (332 bytes security) (deflated 0%) adding: states/open_g_data.rds (332 bytes security) (deflated 0%) adding: states/promoter_flanking_g_data.rds (332 bytes security) (deflated 0%) adding: states/promoter_g_data.rds (332 bytes security) (deflated 0%) adding: states/read_vcfs_as_granges_output.rds (332 bytes security) (deflated 12%) adding: states/regulatory_data.rds (332 bytes security) (stored 0%) adding: states/TF_binding_g_data.rds (332 bytes security) (deflated 0%)