Package: MethPed

Version: 1.6.0

Command: rm -rf MethPed.buildbin-libdir MethPed.Rcheck && mkdir MethPed.buildbin-libdir MethPed.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MethPed.buildbin-libdir MethPed_1.6.0.tar.gz >MethPed.Rcheck\00install.out 2>&1 && cp MethPed.Rcheck\00install.out MethPed-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=MethPed.buildbin-libdir --install="check:MethPed-install.out" --force-multiarch --no-vignettes --timings MethPed_1.6.0.tar.gz

StartedAt: 2018-04-12 01:19:48 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 01:27:13 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 445.0 seconds

RetCode: 0

Status:  OK

CheckDir: MethPed.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf MethPed.buildbin-libdir MethPed.Rcheck && mkdir MethPed.buildbin-libdir MethPed.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MethPed.buildbin-libdir MethPed_1.6.0.tar.gz >MethPed.Rcheck\00install.out 2>&1 && cp MethPed.Rcheck\00install.out MethPed-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=MethPed.buildbin-libdir --install="check:MethPed-install.out" --force-multiarch --no-vignettes --timings MethPed_1.6.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/MethPed.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MethPed/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MethPed' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MethPed' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  9.8Mb
  sub-directories of 1Mb or more:
    R      2.3Mb
    data   6.7Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... NOTE
  Note: found 3 marked Latin-1 strings
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
MethPed         100.00   0.38  100.40
summary.methped  33.50   0.14   33.64
plot.methped     31.48   0.10   31.60
probeMis         30.63   0.11   30.75
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
MethPed         94.98   0.31   95.32
plot.methped    29.37   0.13   29.50
summary.methped 28.10   0.17   28.28
probeMis        27.89   0.17   28.06
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/MethPed.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'MethPed' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'MethPed'
    finding HTML links ... done
    MethPed                                 html  
    MethPed_900probes                       html  
    MethPed_sample                          html  
    checkNA                                 html  
    plot.methped                            html  
    probeMis                                html  
    summary.methped                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'MethPed' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MethPed' as MethPed_1.6.0.zip
* DONE (MethPed)
In R CMD INSTALL
In R CMD INSTALL