Package: M3C

Version: 1.0.0

Command: rm -rf M3C.buildbin-libdir M3C.Rcheck && mkdir M3C.buildbin-libdir M3C.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=M3C.buildbin-libdir M3C_1.0.0.tar.gz >M3C.Rcheck\00install.out 2>&1 && cp M3C.Rcheck\00install.out M3C-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=M3C.buildbin-libdir --install="check:M3C-install.out" --force-multiarch --no-vignettes --timings M3C_1.0.0.tar.gz

StartedAt: 2018-04-12 01:04:52 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 01:10:20 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 328.1 seconds

RetCode: 0

Status:  OK

CheckDir: M3C.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf M3C.buildbin-libdir M3C.Rcheck && mkdir M3C.buildbin-libdir M3C.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=M3C.buildbin-libdir M3C_1.0.0.tar.gz >M3C.Rcheck\00install.out 2>&1 && cp M3C.Rcheck\00install.out M3C-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=M3C.buildbin-libdir --install="check:M3C-install.out" --force-multiarch --no-vignettes --timings M3C_1.0.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/M3C.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'M3C/DESCRIPTION' ... OK
* this is package 'M3C' version '1.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'M3C' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.6Mb
  sub-directories of 1Mb or more:
    doc   5.2Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
CDF: no visible binding for global variable 'consensusindex'
CDF: no visible binding for global variable 'k'
CDF: no visible global function definition for 'png'
CDF: no visible global function definition for 'dev.off'
CDF: no visible binding for global variable 'K'
CDF: no visible binding for global variable 'PAC_SCORE'
M3C: no visible binding for global variable 'i'
M3C: no visible binding for global variable 'K'
M3C: no visible binding for global variable 'RCSI'
M3C: no visible binding for global variable 'P_SCORE'
M3C: no visible global function definition for 'png'
M3C: no visible global function definition for 'dev.off'
M3Creal: no visible global function definition for 'colorRampPalette'
M3Creal: no visible global function definition for 'png'
M3Creal: no visible global function definition for 'dev.off'
clustersim: no visible binding for global variable 'X3'
clustersim: no visible binding for global variable 'PC1'
clustersim: no visible binding for global variable 'PC2'
clustersim: no visible global function definition for 'png'
clustersim: no visible global function definition for 'dev.off'
myPal: no visible global function definition for 'rgb'
Undefined global functions or variables:
  K PAC_SCORE PC1 PC2 P_SCORE RCSI X3 colorRampPalette consensusindex
  dev.off i k png rgb
Consider adding
  importFrom("grDevices", "colorRampPalette", "dev.off", "png", "rgb")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
           user system elapsed
clustersim 5.61   0.17    7.05
M3C        4.33   0.05  101.50
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
    user system elapsed
M3C 5.03   0.03  114.79
* checking for unstated dependencies in vignettes ... NOTE
'::' or ':::' imports not declared from:
  'ggsci' 'gplots'
'library' or 'require' calls not declared from:
  'ggsci' 'gplots'
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/M3C.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'M3C' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'M3C'
    finding HTML links ... done
    M3C                                     html  
    clustersim                              html  
    desx                                    html  
    mydata                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'M3C' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'M3C' as M3C_1.0.0.zip
* DONE (M3C)
In R CMD INSTALL
In R CMD INSTALL