Nathan Sheffield
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/LOLA |
| Branch: RELEASE_3_6 |
| Last Commit: 0e9367e |
| Last Changed Date: 2017-10-30 12:40:54 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:26:49 -0400 (Thu, 12 Apr 2018).
| Package 757/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| LOLA 1.8.0 Nathan Sheffield
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: LOLA |
| Version: 1.8.0 |
| Command: cd LOLA.buildbin-libdir/LOLA && zip -r ../../LOLA_1.8.0.zip . & cd ../.. |
| StartedAt: 2018-04-12 04:48:23 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 04:49:00 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 37.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: LOLA_1.8.0.zip |
| PackageFileSize: 1.689 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd LOLA.buildbin-libdir/LOLA && zip -r ../../LOLA_1.8.0.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: CITATION (332 bytes security) (deflated 38%) adding: data/ (372 bytes security) (stored 0%) adding: data/sample_input.RData (332 bytes security) (deflated 0%) adding: data/sample_universe.RData (332 bytes security) (deflated 0%) adding: DESCRIPTION (332 bytes security) (deflated 44%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/choosingUniverse.html (332 bytes security) (deflated 70%) adding: doc/choosingUniverse.R (332 bytes security) (deflated 73%) adding: doc/choosingUniverse.Rmd (332 bytes security) (deflated 58%) adding: doc/gettingStarted.html (332 bytes security) (deflated 66%) adding: doc/gettingStarted.R (332 bytes security) (deflated 73%) adding: doc/gettingStarted.Rmd (332 bytes security) (deflated 60%) adding: doc/index.html (332 bytes security) (deflated 72%) adding: doc/usingLOLACore.html (332 bytes security) (deflated 70%) adding: doc/usingLOLACore.R (332 bytes security) (deflated 74%) adding: doc/usingLOLACore.Rmd (332 bytes security) (deflated 58%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/examples/ (372 bytes security) (stored 0%) adding: extdata/examples/combined_regions.bed (332 bytes security) (deflated 63%) adding: extdata/hg19/ (372 bytes security) (stored 0%) adding: extdata/hg19/ucsc_example/ (372 bytes security) (stored 0%) adding: extdata/hg19/ucsc_example/collection.txt (332 bytes security) (deflated 9%) adding: extdata/hg19/ucsc_example/index.txt (332 bytes security) (deflated 6%) adding: extdata/hg19/ucsc_example/regions/ (372 bytes security) (stored 0%) adding: extdata/hg19/ucsc_example/regions/cpgIslandExt.bed (332 bytes security) (deflated 64%) adding: extdata/hg19/ucsc_example/regions/laminB1Lads.bed (332 bytes security) (deflated 55%) adding: extdata/hg19/ucsc_example/regions/numtSAssembled.bed (332 bytes security) (deflated 59%) adding: extdata/hg19/ucsc_example/regions/vistaEnhancers.bed (332 bytes security) (deflated 61%) adding: extdata/hg19/ucsc_example/regions/vistaEnhancers_colNames.bed (332 bytes security) (deflated 61%) adding: extdata/hg19/ucsc_example/sizes.txt (332 bytes security) (deflated 22%) adding: extdata/multi/ (372 bytes security) (stored 0%) adding: extdata/multi/collection1/ (372 bytes security) (stored 0%) adding: extdata/multi/collection1/collection.txt (332 bytes security) (deflated 9%) adding: extdata/multi/collection1/index.txt (332 bytes security) (deflated 6%) adding: extdata/multi/collection1/regions/ (372 bytes security) (stored 0%) adding: extdata/multi/collection1/regions/cpgIslandExt.bed (332 bytes security) (deflated 32%) adding: extdata/multi/collection1/regions/laminB1Lads.bed (332 bytes security) (deflated 39%) adding: extdata/multi/collection1/regions/vistaEnhancers.bed (332 bytes security) (deflated 38%) adding: extdata/multi/collection1/sizes.txt (332 bytes security) (deflated 9%) adding: extdata/multi/collection2/ (372 bytes security) (stored 0%) adding: extdata/multi/collection2/index.txt (332 bytes security) (deflated 6%) adding: extdata/multi/collection2/regions/ (372 bytes security) (stored 0%) adding: extdata/multi/collection2/regions/cpgIslandExt.bed (332 bytes security) (deflated 32%) adding: extdata/multi/collection2/regions/laminB1Lads.bed (332 bytes security) (deflated 39%) adding: extdata/multi/collection2/regions/vistaEnhancers.bed (332 bytes security) (deflated 38%) adding: extdata/multi/collection2/sizes.txt (332 bytes security) (deflated 9%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 66%) adding: help/LOLA.rdb (332 bytes security) (deflated 3%) adding: help/LOLA.rdx (332 bytes security) (stored 0%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 69%) adding: html/buildRestrictedUniverse.html (332 bytes security) (deflated 56%) adding: html/checkUniverseAppropriateness.html (332 bytes security) (deflated 56%) adding: html/cleanws.html (332 bytes security) (deflated 49%) adding: html/countOverlapsAnyRev.html (332 bytes security) (deflated 53%) adding: html/extractEnrichmentOverlaps.html (332 bytes security) (deflated 61%) adding: html/getRegionFile.html (332 bytes security) (deflated 57%) adding: html/getRegionSet.html (332 bytes security) (deflated 57%) adding: html/lapplyAlias.html (332 bytes security) (deflated 53%) adding: html/listRegionSets.html (332 bytes security) (deflated 53%) adding: html/listToGRangesList.html (332 bytes security) (deflated 50%) adding: html/loadRegionDB.html (332 bytes security) (deflated 56%) adding: html/LOLA.html (332 bytes security) (deflated 43%) adding: html/mergeRegionDBs.html (332 bytes security) (deflated 57%) adding: html/nlist.html (332 bytes security) (deflated 44%) adding: html/plotTopLOLAEnrichments.html (332 bytes security) (deflated 56%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/readBed.html (332 bytes security) (deflated 49%) adding: html/readCollection.html (332 bytes security) (deflated 54%) adding: html/readCollectionAnnotation.html (332 bytes security) (deflated 53%) adding: html/readCollectionFiles.html (332 bytes security) (deflated 56%) adding: html/readRegionGRL.html (332 bytes security) (deflated 57%) adding: html/readRegionSetAnnotation.html (332 bytes security) (deflated 57%) adding: html/redefineUserSets.html (332 bytes security) (deflated 63%) adding: html/replaceFileExtension.html (332 bytes security) (deflated 52%) adding: html/runLOLA.html (332 bytes security) (deflated 57%) adding: html/sampleGRL.html (332 bytes security) (deflated 51%) adding: html/setLapplyAlias.html (332 bytes security) (deflated 56%) adding: html/setSharedDataDir.html (332 bytes security) (deflated 51%) adding: html/splitDataTable.html (332 bytes security) (deflated 51%) adding: html/splitFileIntoCollection.html (332 bytes security) (deflated 57%) adding: html/userSets.html (332 bytes security) (deflated 51%) adding: html/userUniverse.html (332 bytes security) (deflated 48%) adding: html/write.tsv.html (332 bytes security) (deflated 52%) adding: html/writeCombinedEnrichment.html (332 bytes security) (deflated 61%) adding: html/writeDataTableSplitByColumn.html (332 bytes security) (deflated 58%) adding: INDEX (332 bytes security) (deflated 70%) adding: MD5 (332 bytes security) (deflated 54%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/data.rds (332 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 66%) adding: NEWS (332 bytes security) (deflated 11%) adding: R/ (372 bytes security) (stored 0%) adding: R/LOLA (332 bytes security) (deflated 41%) adding: R/LOLA.rdb (332 bytes security) (deflated 3%) adding: R/LOLA.rdx (332 bytes security) (stored 0%) adding: scripts/ (372 bytes security) (stored 0%) adding: scripts/LOLA (332 bytes security) (deflated 61%) adding: web/ (372 bytes security) (stored 0%) adding: web/index.html (332 bytes security) (deflated 63%) adding: web/webComponents/ (372 bytes security) (stored 0%) adding: web/webComponents/ajax-loader.gif (332 bytes security) (deflated 16%) adding: web/webComponents/d3.min.js (332 bytes security) (deflated 6%) adding: web/webComponents/gridstyle.css (332 bytes security) (deflated 69%)