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CHECK report for LINC on tokay1

This page was generated on 2018-04-12 13:28:40 -0400 (Thu, 12 Apr 2018).

Package 747/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LINC 1.6.0
Manuel Goepferich
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/LINC
Branch: RELEASE_3_6
Last Commit: 0d2df56
Last Changed Date: 2017-10-30 12:41:22 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: LINC
Version: 1.6.0
Command: rm -rf LINC.buildbin-libdir LINC.Rcheck && mkdir LINC.buildbin-libdir LINC.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=LINC.buildbin-libdir LINC_1.6.0.tar.gz >LINC.Rcheck\00install.out 2>&1 && cp LINC.Rcheck\00install.out LINC-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=LINC.buildbin-libdir --install="check:LINC-install.out" --force-multiarch --no-vignettes --timings LINC_1.6.0.tar.gz
StartedAt: 2018-04-12 01:01:17 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 01:23:24 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 1327.3 seconds
RetCode: 0
Status:  OK  
CheckDir: LINC.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf LINC.buildbin-libdir LINC.Rcheck && mkdir LINC.buildbin-libdir LINC.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=LINC.buildbin-libdir LINC_1.6.0.tar.gz >LINC.Rcheck\00install.out 2>&1 && cp LINC.Rcheck\00install.out LINC-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=LINC.buildbin-libdir --install="check:LINC-install.out" --force-multiarch --no-vignettes --timings LINC_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/LINC.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'LINC/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'LINC' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'LINC' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.4Mb
  sub-directories of 1Mb or more:
    doc    2.6Mb
    libs   1.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... NOTE
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
              old_size new_size compress
  sysdata.rda    449Kb    298Kb       xz
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.6-bioc/meat/LINC.buildbin-libdir/LINC/libs/i386/LINC.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
getbio-methods      331.05  19.81  351.03
singlelinc-methods   94.02   5.14   99.34
clusterlinc-methods  13.09   0.07   13.16
linc-methods          5.20   0.08    5.28
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
getbio-methods      314.42  17.22  332.08
singlelinc-methods   89.09   4.00   93.35
clusterlinc-methods  18.64   0.11   18.75
linc-methods          5.84   0.17    6.01
plotlinc-methods      5.54   0.08    5.61
Arith-methods         5.49   0.06    5.55
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/LINC.Rcheck/00check.log'
for details.



Installation output

LINC.Rcheck/00install.out


install for i386

* installing *source* package 'LINC' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include"   -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c Cppspear.cpp -o Cppspear.o
Cppspear.cpp: In function 'Rcpp::NumericMatrix Cppspear(Rcpp::NumericMatrix, Rcpp::NumericMatrix)':
Cppspear.cpp:78:14: warning: unused variable 'qspear' [-Wunused-variable]
       double qspear;double nfraction;
              ^
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include"   -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c LINC_init.c -o LINC_init.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include"   -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include"   -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c docdd.cpp -o docdd.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include"   -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c doesd.cpp -o doesd.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o LINC.dll tmp.def Cppspear.o LINC_init.o RcppExports.o docdd.o doesd.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/LINC.buildbin-libdir/LINC/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for 'history' in package 'LINC'
** help
*** installing help indices
  converting help for package 'LINC'
    finding HTML links ... done
    Arith-methods                           html  
    BRAIN_EXPR                              html  
    LINCbio-class                           html  
    LINCcluster-class                       html  
    LINCfeature-class                       html  
    LINCmatrix-class                        html  
    LINCsingle-class                        html  
    assignment-methods                      html  
    changeOrgDb                             html  
    clusterlinc-methods                     html  
    correlation-methods                     html  
    express-methods                         html  
    feature                                 html  
    getbio-methods                          html  
    getcoexpr                               html  
    getlinc-methods                         html  
    history-methods                         html  
    justlinc-methods                        html  
    linCenvir-methods                       html  
    linc-methods                            html  
    linctable-methods                       html  
    plotlinc-methods                        html  
    querycluster                            html  
    results-methods                         html  
    singlelinc-methods                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'LINC' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include"   -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c Cppspear.cpp -o Cppspear.o
Cppspear.cpp: In function 'Rcpp::NumericMatrix Cppspear(Rcpp::NumericMatrix, Rcpp::NumericMatrix)':
Cppspear.cpp:78:14: warning: unused variable 'qspear' [-Wunused-variable]
       double qspear;double nfraction;
              ^
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include"   -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c LINC_init.c -o LINC_init.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include"   -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include"   -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c docdd.cpp -o docdd.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include"   -I"C:/local323/include"     -O2 -Wall  -mtune=generic -c doesd.cpp -o doesd.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o LINC.dll tmp.def Cppspear.o LINC_init.o RcppExports.o docdd.o doesd.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/LINC.buildbin-libdir/LINC/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'LINC' as LINC_1.6.0.zip
* DONE (LINC)
In R CMD INSTALL
In R CMD INSTALL

Tests output

LINC.Rcheck/tests_i386/runTests.Rout


R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("LINC")


This is LINC - Co-Expression Analysis of lincRNAs
 (Manuel Goepferich & Carl Herrmann)

Attaching package: 'LINC'

The following object is masked from 'package:utils':

    history

removed 4 zero variance genes from input
removed genes with duplicated names
linc: gene system(s) assumed:
ENTREZID
linc: Correlation function with 'everything' called
linc: Computation of correlation matrix started
clusterlinc: computation for the correlation test started
clusterlinc: distance matrix called with the method dicedist
clusterlinc: co-expressed genes selected based on 'pvalCutOff'
removed 4 zero variance genes from input
removed genes with duplicated names
linc: gene system(s) assumed:
ENTREZID
linc: Correlation function with 'everything' called
linc: Computation of correlation matrix started
singlelinc: no test conducted, genes selected based on correlation values
singlelinc: co-expression analysis yielded 9 genes
singlelinc: The function enrichGO will be called.
Loading required package: org.Hs.eg.db
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

removed 4 zero variance genes from input
removed genes with duplicated names
linc: gene system(s) assumed:
ENTREZID
linc: Correlation function with 'everything' called
linc: Computation of correlation matrix started
removed 4 zero variance genes from input
removed genes with duplicated names
linc: gene system(s) assumed:
ENTREZID
linc: Correlation function with 'everything' called
linc: Computation of correlation matrix started
clusterlinc: computation for the correlation test started
clusterlinc: distance matrix called with the method dicedist
clusterlinc: co-expressed genes selected based on 'pvalCutOff'


RUNIT TEST PROTOCOL -- Thu Apr 12 01:22:22 2018 
*********************************************** 
Number of test functions: 4 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
LINC RUnit Tests - 4 test functions, 0 errors, 0 failures
Number of test functions: 4 
Number of errors: 0 
Number of failures: 0 
Warning messages:
1: In linc(cor_test_mat, codingGenes = c(TRUE, FALSE, TRUE, TRUE, FALSE,  :
  Input 'object' contains infinite values
2: In linc(cor_test_mat, codingGenes = c(TRUE, FALSE, TRUE, TRUE, FALSE,  :
  Input 'object' contains infinite values
3: In singlelinc(linc_matrix, query = "17", onlycor = T, underth = F,  :
  'testFun' was supplied and 'onlycor' equals 'TRUE', here 'onlycor' has the higher priority
4: In linc(cor_test_mat, codingGenes = c(TRUE, FALSE, TRUE, TRUE, FALSE,  :
  Input 'object' contains infinite values
5: In linc(cor_test_mat, codingGenes = c(TRUE, FALSE, TRUE, TRUE, FALSE,  :
  Input 'object' contains infinite values
> 
> proc.time()
   user  system elapsed 
  55.29    3.35   58.75 

LINC.Rcheck/tests_x64/runTests.Rout


R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("LINC")


This is LINC - Co-Expression Analysis of lincRNAs
 (Manuel Goepferich & Carl Herrmann)

Attaching package: 'LINC'

The following object is masked from 'package:utils':

    history

removed 4 zero variance genes from input
removed genes with duplicated names
linc: gene system(s) assumed:
ENTREZID
linc: Correlation function with 'everything' called
linc: Computation of correlation matrix started
clusterlinc: computation for the correlation test started
clusterlinc: distance matrix called with the method dicedist
clusterlinc: co-expressed genes selected based on 'pvalCutOff'
removed 4 zero variance genes from input
removed genes with duplicated names
linc: gene system(s) assumed:
ENTREZID
linc: Correlation function with 'everything' called
linc: Computation of correlation matrix started
singlelinc: no test conducted, genes selected based on correlation values
singlelinc: co-expression analysis yielded 9 genes
singlelinc: The function enrichGO will be called.
Loading required package: org.Hs.eg.db
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

removed 4 zero variance genes from input
removed genes with duplicated names
linc: gene system(s) assumed:
ENTREZID
linc: Correlation function with 'everything' called
linc: Computation of correlation matrix started
removed 4 zero variance genes from input
removed genes with duplicated names
linc: gene system(s) assumed:
ENTREZID
linc: Correlation function with 'everything' called
linc: Computation of correlation matrix started
clusterlinc: computation for the correlation test started
clusterlinc: distance matrix called with the method dicedist
clusterlinc: co-expressed genes selected based on 'pvalCutOff'


RUNIT TEST PROTOCOL -- Thu Apr 12 01:23:19 2018 
*********************************************** 
Number of test functions: 4 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
LINC RUnit Tests - 4 test functions, 0 errors, 0 failures
Number of test functions: 4 
Number of errors: 0 
Number of failures: 0 
Warning messages:
1: In linc(cor_test_mat, codingGenes = c(TRUE, FALSE, TRUE, TRUE, FALSE,  :
  Input 'object' contains infinite values
2: In linc(cor_test_mat, codingGenes = c(TRUE, FALSE, TRUE, TRUE, FALSE,  :
  Input 'object' contains infinite values
3: In singlelinc(linc_matrix, query = "17", onlycor = T, underth = F,  :
  'testFun' was supplied and 'onlycor' equals 'TRUE', here 'onlycor' has the higher priority
4: In linc(cor_test_mat, codingGenes = c(TRUE, FALSE, TRUE, TRUE, FALSE,  :
  Input 'object' contains infinite values
5: In linc(cor_test_mat, codingGenes = c(TRUE, FALSE, TRUE, TRUE, FALSE,  :
  Input 'object' contains infinite values
> 
> proc.time()
   user  system elapsed 
  54.25    2.75   57.03 

Example timings

LINC.Rcheck/examples_i386/LINC-Ex.timings

nameusersystemelapsed
Arith-methods4.200.054.25
BRAIN_EXPR0.220.010.23
LINCbio-class000
LINCcluster-class000
LINCfeature-class000
LINCmatrix-class000
LINCsingle-class000
assignment-methods0.190.060.25
changeOrgDb0.220.000.22
clusterlinc-methods13.09 0.0713.16
correlation-methods0.280.010.29
express-methods0.440.030.47
feature1.530.041.56
getbio-methods331.05 19.81351.03
getcoexpr0.610.000.61
getlinc-methods0.250.000.25
history-methods0.220.000.22
justlinc-methods000
linCenvir-methods0.220.010.24
linc-methods5.200.085.28
linctable-methods000
plotlinc-methods4.160.084.23
querycluster0.620.000.63
results-methods0.20.00.2
singlelinc-methods94.02 5.1499.34

LINC.Rcheck/examples_x64/LINC-Ex.timings

nameusersystemelapsed
Arith-methods5.490.065.55
BRAIN_EXPR0.190.000.19
LINCbio-class000
LINCcluster-class000
LINCfeature-class000
LINCmatrix-class000
LINCsingle-class000
assignment-methods0.190.020.20
changeOrgDb0.260.010.28
clusterlinc-methods18.64 0.1118.75
correlation-methods0.370.030.41
express-methods0.380.080.45
feature1.620.081.70
getbio-methods314.42 17.22332.08
getcoexpr0.530.060.59
getlinc-methods0.220.000.22
history-methods0.190.000.19
justlinc-methods000
linCenvir-methods0.190.000.19
linc-methods5.840.176.01
linctable-methods000
plotlinc-methods5.540.085.61
querycluster0.480.000.49
results-methods0.170.000.17
singlelinc-methods89.09 4.0093.35